Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854: BBKW_1317
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Entry
BBKW_1317 CDS
T04223
Name
(GenBank) DNA topoisomerase IV subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
bks
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Brite
KEGG Orthology (KO) [BR:
bks00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bks03032
]
BBKW_1317
03400 DNA repair and recombination proteins [BR:
bks03400
]
BBKW_1317
Enzymes [BR:
bks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BBKW_1317
DNA replication proteins [BR:
bks03032
]
Prokaryotic type
DNA Topoisomerases
BBKW_1317
DNA repair and recombination proteins [BR:
bks03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBKW_1317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
LRIM1_dimer
Inp1
DUF4890
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
BAQ29452
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Position
1525254..1527941
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AA seq
895 aa
AA seq
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MVSHRKSAKPAFDPRTVKENIIETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR
IIYQMGQMNLNPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG
NFGSLDDGPAASRYTEARMAQAALGMNANIAEDTVDFTPNYDNKLQEPTVLPAAIPNLLV
NGGSGIAVGMATNMATHNLGEVVAAAKHLMHHPDATLEELMRYVPGPDWPSGGVIVGRKG
IREAYETGRGALTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGI
SGAIDLTDRHNGTRLVIEIKTGFDPNAILAQLFKHTPLQDNFTINNVALVNGRPHTMGLK
EMLQVWVNHRRVVIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKT
KLIKVFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELDRILASTEALDGVV
IAEMDEAVATYGTPRRTVLLDEDADGRLVPVAAHGDDGVSASAVAAARAAATVSSAAADV
AAAAKAAKKAGEDNAAAIALQIDDEPCAVMLSATGLIARTSENALERWENLSSADQRVKD
DQIISIFRTTTRSSYGLITSAGRLIVAHVVELPVVSTDGPLHVTGGVRAEELIGMTENTD
PIRGERVIAAIAMPSADDSGDNAVEPTPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDD
DEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSAAAFAVVP
ASKVAWNYEEGENGLFSASGAVVLTVAGDSEALPGTENGSAKVTPLEMYPTKGRGTGGVR
SQRFLKGQDTLVLAFVGTYPVHASTQGGTGVELPKPDMRRDGSGTELSAPIAIIG
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgcaccgcaaatcggcaaaaccagcctttgacccgcgtacggtcaaagagaac
atcatcgaaacaccgttgaacgaggagatgagcaagtccttcctcgaatacgcgtattcg
gtgatctatgcccgcgcgttgcccgatgccagagacggtttgaagccggtgcagcgccgc
atcatctaccagatgggtcaaatgaacctcaatccggatcgtccgtacatgaagtcggcc
cgtgtggtcggcgaggtgatgggtaagcttcacccgcatggcgattccgcgatttatgag
gcgatggtccgtcttgcgcaaccgtttgccatgcgtctgcccctggtagacggccacggt
aatttcggatcccttgatgatggtccggcagcatcgcgttacaccgaggctcgcatggcc
caggctgcgcttggtatgaacgcgaatatcgccgaagatacagtggatttcacaccgaac
tacgacaacaagctgcaggagccaaccgttttgcctgccgcgattccgaatctgctcgtc
aatggcggttccggcatcgccgtcggcatggccacgaatatggcgacgcacaatctgggc
gaagtggttgccgcagccaaacatttgatgcatcatcctgatgccacattggaagagctt
atgcgctatgttcccggccctgattggccgagcggtggcgtgattgtgggacgcaagggc
attcgcgaggcctacgaaaccggtcgtggcgcgttgaccacgcgttcagtaacgcatatt
gaaaacgtaaccgctcgtaagaaggcaattgtcgtaacggaactgccgttcatggtcggc
ccggaacgtgtgttggaacgtatttccgagggtgtgaaaaatcgcaagctggagggtatt
tccggcgcgatcgacctgacggaccgccataacggcactcgccttgtcattgaaatcaaa
accggcttcgacccgaacgccatactggcgcaactgttcaagcacacaccgctgcaagac
aatttcaccatcaataacgtggcgttggtcaacggccgcccacacaccatgggcttgaag
gaaatgcttcaggtgtgggtaaatcatcgccgtgtggtgattcgccgtcgtagcgaattc
cgcaagaagaaggcgctggaacgtctgcatttggtggaaggccttctgcttgcgatggtc
gacattgacgaagtgattcaggtgattcgctcgtctgacgatgccgaagccgcaaagacg
aagctcatcaaggtgtttgatctggatgagattcaggcacagtacattcttgacctgcgc
ttgcgtcgtctgacgaaaatgagccgcatcgagcttgaagcggaacgcgacgatttgaag
caacgtatcgaggaactggatcgcattctcgcctccactgaggcgcttgacggcgtggtg
atcgccgaaatggacgaggctgttgccacgtatggcacgccacgtcgcactgtgctgttg
gatgaagacgctgacggcaggcttgtgcctgttgcagcgcatggcgatgatggcgtatcc
gcctccgccgtggctgcggcacgcgctgcagccacggtgtcgtccgccgccgccgatgtc
gccgccgccgcgaaggccgcgaaaaaagccggcgaagacaatgccgcagccatagctttg
cagatcgacgatgaaccctgcgcggtgatgttgtcggccactggtctgatcgcacgcacc
tccgaaaacgcgttggagcgttgggagaatctctcttctgccgaccagcgtgtaaaggat
gatcagattatttcgatcttccgcacgaccacgcgttcctcatatggtttgatcacatct
gccggtcgtctgattgtggcgcatgtcgtggaattgccggttgtgtctacggatgggccg
ctccacgtgactggcggcgttcgcgccgaagagttaatcggcatgacggaaaacaccgat
ccaattcgtggtgaacgtgtgatcgccgcgatcgccatgccatccgccgacgattccggt
gataatgccgtagagcccactcctcttgcgttgggtacgcgcaatggtgtagtcaagcgt
tggaatcgcgaatcgcccaccaccatggattcatggagtgtcatcgatttgaaggatgat
gatgaagttctggctgccgctgaagcacgtgacgaggatcggctggtgtttgtatccacc
gactcctccctgctgacgttcgaggcgaagaacgtacgcccgcagggacgcaccgccgga
ggaatggcaggcattcgcctggctgaaggctgctcagcggctgcattcgcggtggttccc
gccagcaaggtggcatggaattatgaagaaggcgagaatggcctgttctccgcgtctgga
gctgtggtgttgacggttgcgggcgattccgaagcgttgccgggtacggagaatggttct
gcgaaggtaaccccgttggaaatgtatccgacgaagggccgtggtaccggtggtgttcgt
tcgcagcgattcctcaagggacaggatacgttggttctcgcatttgtgggcacgtaccca
gtacacgcctccacgcagggcggtaccggcgtggaattgccgaagccggatatgcgtcga
gatggctctggcacggagctttccgcaccaatcgccatcatcggctaa
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