Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854: BBKW_1630
Help
Entry
BBKW_1630 CDS
T04223
Name
(GenBank) putative DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bks
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Pathway
bks03420
Nucleotide excision repair
bks03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBKW_1630
03430 Mismatch repair
BBKW_1630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bks03400
]
BBKW_1630
Enzymes [BR:
bks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBKW_1630
DNA repair and recombination proteins [BR:
bks03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBKW_1630
MMR (mismatch excision repair)
Other MMR factors
BBKW_1630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
UvrD_C
AAA_11
UvrD_C_2
AAA_30
AAA_22
HrpB1_HrpK
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAQ29765
LinkDB
All DBs
Position
1925633..1927375
Genome browser
AA seq
580 aa
AA seq
DB search
MSKECIGVNYGLAKAEADKVDARIIEALKSGHSFRVEAGAGSGKTYSLNRVIEWIQANKW
SAYNRKKQNVICITYTNAAVDVIAERLAKDSFILPSTVHSFAWNAIKQYQGVLIEAVTTN
PDYLPDEGDFNQVTEVAYTLGHRYKENGVQYLYHDDVLKLFCQLLDNAKFRRVFADKYPL
ILIDEYQDSYKPIIDRFINFFIAKSTGPQFGFFGDAWQTIYQSNKACGEIKHEKIEVIKK
GSNFRSAPRIVQLLNNIRPELPQKSAIDGFDGEVLVITCDDYSGARRTERNFKNELPAAE
FKARLNTIVTKIEQNTPADEDLKVLMITHKVLASQQGYEQLLDILNDALRNKEDPFLIFF
ADTIESIYHALDTSNTQLLFDTLGIKRYPITKKSEKTKWKTLYEQLTEVRTQKAIDVLKT
IIDSQLIPIPPKVDGWYRLYMDAPETMYASKATIQQFLQLDYAQFIAVRDFLYPDAQFST
EHGVKGEEYDNVVFVISRGWNQYQFETYAPMITGHASIPKGKEASYERNRNLFYVCCSRP
KKRLFFFVTVPIDSSFRTFLVKLTGEESILTYRQFMEASN
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagagtgtattggcgtaaattatggtcttgcaaaagcagaagccgataaggtt
gatgcacggattatcgaagcgcttaaatcaggacacagtttccgtgttgaagctggtgcg
ggttctggaaaaacgtactctctgaatcgagttattgaatggatacaagcaaataaatgg
tctgcctataaccgaaagaaacaaaatgtgatctgtattacatatacaaatgcggctgtg
gatgtaattgcagaaagacttgcaaaagattcatttattcttccctctacagttcactcg
tttgcatggaatgcaatcaaacagtatcagggtgttttgatcgaagctgtcacaacaaat
cccgattatctgccagacgaaggtgactttaatcaggtcaccgaagttgcatatactttg
gggcatcgctacaaggaaaatggtgttcagtacctctatcatgacgacgttctaaagctc
ttctgccaacttcttgataacgctaaatttcgccgggtatttgcagataaataccctttg
atattgattgatgaatatcaggactcctataagccgattattgatcgctttattaatttt
ttcatagcaaaaagtactggaccgcagttcggctttttcggcgatgcttggcaaaccatc
tatcagtcaaacaaagcctgtggagaaattaaacacgaaaaaatcgaggtaataaagaag
ggatcaaatttccgatctgcgccaaggattgttcaacttttaaataatatccgtcctgaa
ttgccgcaaaaatcagccattgatggatttgacggtgaagttttagtgattacgtgtgat
gattattcgggagctcgtcgcacagaacgtaatttcaaaaatgaattgccggctgccgag
tttaaggcaagactgaacactatcgtaacaaaaattgagcagaacacacctgctgatgaa
gatcttaaagttctgatgattacgcacaaagttcttgcttctcaacaaggctacgagcaa
cttttggatatactgaatgatgcgttgcgcaacaaggaagatccttttcttattttcttt
gctgatacgatagaatcgatatatcatgcgcttgatacttcgaacacccagttgcttttt
gacacgctcggaatcaagcggtatccaattacaaaaaaatccgaaaaaaccaaatggaaa
acgctgtatgagcaactaacagaagttcgcacacaaaaagctattgatgttttgaagact
atcattgatagtcaactgatacccattccgcctaaagtggatggatggtaccgactttat
atggatgctccagaaacaatgtatgcatcaaaggccacaattcagcagtttttacagcta
gattatgcacaatttattgctgttagggattttctatatccagacgcacaattttcaaca
gaacatggcgtaaagggcgaagaatacgataatgttgtttttgttatcagcaggggatgg
aaccagtaccaatttgaaacctatgcgccaatgataacaggtcatgcttctattcctaaa
ggcaaagaagcatcgtatgagcgaaaccggaatcttttctatgtttgttgttcaaggcca
aaaaagcggttgttcttttttgtcaccgtgccgatagattcttcattcagaacttttttg
gtaaaactaaccggtgaagagagtattctaacctatcgacaatttatggaagcatctaat
tag
DBGET
integrated database retrieval system
