Halalkalibacter krulwichiae: BkAM31D_00345
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Entry
BkAM31D_00345 CDS
T04947
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bkw
Halalkalibacter krulwichiae
Pathway
bkw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bkw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BkAM31D_00345 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bkw03400
]
BkAM31D_00345 (mfd)
Enzymes [BR:
bkw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BkAM31D_00345 (mfd)
DNA repair and recombination proteins [BR:
bkw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BkAM31D_00345 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARK28450
UniProt:
A0A1X9M747
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All DBs
Position
67566..71087
Genome browser
AA seq
1173 aa
AA seq
DB search
MLGLQQYLRSNEEIKAFSNSLEMNMKEQLVSGLTGSARTLFMSSLYRDINRPMLVVTHNL
YQAQKLYDDIVSLLGEEKVLLYPVNELISAEIAIASPEMKAQRIDVLNKLVQSFNGIVIA
PLAGVRRQLPPISVWKDAQVDLTVGNDIGNIDSFLQKVIMMGFQRVDMVASPGDISVRGG
IIDVYPLTEQDPIRIELFDTEIDSIRTFEVDNQRSKEERKSVIIGPAQEVLLHKEHYERA
ASLLGEGLTSSLKKMKAKQSKEKLSQHISYEIGQLKQHSGFQGMYKYMSLYYEGDHSLLS
YLSDDTVIIIDEISRVKEIADNLDKEEAEWNTALLEQGEIVHNVTMSVPVFEHMKAKISP
IIYLSLFLKHVPSTNPENVVSITCKSMQQFHGQMQLLKSEIERWTKSNQAIVFIAGSKER
AKRLSLNLEDEEIDTRIVEQATELVGGQVQIMVGNLQSGFELASSKLVVVTEEEVFAKKQ
SKRPQRKQAISNAERIKSYSELKVGDLIVHTNHGIGKYLGVETLEINGLHKDYLHLRYAG
NDKLYVPVEQIDQVQKYVGSEEKDPKIYALGGNDWKKVKKKVQSSVEDIADDLIKLYAER
EASKGFAFSKDSNQQGEFESSFPYQETEDQIRAITEIKKDMEQIRPMDRLLCGDVGYGKT
EVAIRAAFKAIMDGKQVAILVPTTILAQQHYETIKERFTEHPINIGVLSRFRSRKEQTET
LKGVKAGSVDLIVGTHRLLSKDVVFKDLGLLIVDEEQRFGVTHKEKIKQLKSNIDVLTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNAALVREAIEREMTRGGQVYFL
YNRVEDIERMTEQLSMLVPDARITYAHGQMNERELETIMLDFLEGNSDVLVTTTIIETGV
DIPNVNTLIIYDADKMGLSQLYQIRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLTIRGAGNLLGAQQHGFIESVGFDLYSQMLKEAIEERKGDKPKEPP
FQVEMDVKIDAYIPETYIQDAKQKIEMYKRFKGAETVEDLTDLKDEMFDRFGEYPKQVDF
LLRLTAIKLLANQERVEQIIETKDQVDLILSSETSQLMDGAKLFELTHKLGREVILGTSG
EKIKFAIKTKTLSDEQVLTFIEKIVESLRKGRK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgttaggattgcaacaatacttacgttcaaacgaagagataaaagcgttttcaaatagt
cttgaaatgaatatgaaagagcagcttgtatcaggattaacagggtctgcacgaacatta
ttcatgtcatctttataccgtgatataaatagaccaatgcttgtcgttacgcataattta
tatcaagcacaaaagttatatgatgatattgtaagtttgttaggggaagagaaggtgctt
ttatatcctgtaaatgaattaatttctgctgagatcgcaatagctagtcctgaaatgaag
gctcagagaattgatgtcttaaataagttagttcaatcatttaatgggatcgtgattgcg
ccattagctggggtccgaaggcagcttcctccaattagtgtatggaaagatgcacaagtc
gatcttacagtagggaatgatattggtaatattgattcgtttctgcagaaggtcattatg
atgggatttcaaagggtcgatatggttgcttctccaggtgatattagtgtgcgtggaggg
atcatagatgtgtatccactcactgaacaggatccaatacgaattgaactttttgatacg
gaaattgattcaattcggacttttgaagtcgataatcaacgttccaaggaagaacggaag
tcagtcattattggcccagcacaagaagtccttttacataaggagcactatgaaagggca
gcaagcttactaggagaagggttaacatcatccttgaaaaagatgaaagcaaagcaatca
aaggaaaagttgtctcagcatatttcttatgaaataggacaattaaagcaacattccggc
ttccaaggaatgtataagtatatgtcactttattatgagggtgatcattccttattgtct
tatttgtcagatgacacggttattattattgatgaaatttctcgtgtgaaagaaattgct
gataatttagataaagaagaagcggaatggaatacagctttacttgagcaaggagaaatt
gttcataatgtgacaatgtctgtgccggtatttgaacatatgaaagcaaagataagtcca
attatttatctttctttgttcttaaagcatgttccatcaacgaatccggaaaatgttgtt
agtattacatgtaaatcgatgcaacaattccatggacagatgcagcttctaaaatcggaa
attgaaagatggacaaagagcaaccaagctatcgtgtttatagctgggtcaaaagaacgt
gcaaaacgactttctcttaatttagaggatgaagaaattgatactcgcattgttgaacaa
gcaacagaattagttggcggacaagttcaaattatggttggaaacttgcagtctggcttt
gagctagcttcaagtaaacttgttgtggttacagaagaagaagtgtttgccaagaaacaa
tcaaagaggccgcaacgtaagcaagcgatctcgaatgctgaacggatcaaaagttattca
gaacttaaagttggcgatttaatcgttcatacaaaccatgggattgggaagtacctaggt
gtagaaacactcgaaattaacgggttgcataaagactatttgcatttgcgttatgctggt
aatgataagctatatgttccggtagaacagattgatcaagtgcaaaagtatgttgggtct
gaagaaaaagatccaaaaatttatgcacttggcggaaatgattggaagaaagtgaaaaag
aaagttcagtcatcggtggaggatattgctgatgacttgattaagctctatgccgagcgc
gaagcgagtaaaggatttgctttctcaaaggatagcaatcaacaaggtgagtttgaatcc
tcattcccttatcaagaaaccgaggatcaaattagagcgatcactgaaattaaaaaagat
atggaacaaattcgcccaatggatcgtttgttatgtggggatgttggttatggaaaaaca
gaggttgcaatacgtgctgcatttaaagcgattatggatggcaagcaagtagcaatcctt
gttccaacaactatattggcacaacaacattatgaaacgattaaagaacgctttactgaa
catccaattaatattggtgttctaagtagattccgttcgagaaaagaacagacggagacg
ttaaaaggagtaaaagcgggttctgttgatctcattgtaggtacacatcgattgctttca
aaagatgttgtttttaaagatttaggcttgttgattgtcgatgaagaacagcggtttggt
gtaacgcataaagagaagattaagcaactaaaatcaaatattgatgtactaacactaaca
gctacaccaattcctagaacgttgcatatgtcgatgcttggagtaagagatctctctgtt
attgaaacacctccagaaaaccgttttcctgtccaaacctatgtcgttgagtataatgcg
gctcttgtccgggaggcgattgagcgtgagatgacacgaggtggtcaagtttatttcctt
tacaatcgtgtagaagatattgaacgaatgactgagcaattatcgatgctcgttccagat
gcgcggatcacatatgcacacggacagatgaacgagcgtgaattagaaacgatcatgctc
gacttcttagaaggtaatagtgatgtattagtaactactacaattatcgaaacaggtgtt
gatattccaaacgtcaatacattgatcatttatgatgcagataaaatgggtctatctcaa
ctatatcaaatacgtggccgtgtaggtcgatcaaatcgggtcgcttatgcctactttacg
taccaacgtgataaggttttaacagaggtagcagaaaagcgtctacaggcaattaaggaa
tttacagaacttggctcagggtttaagattgccatgcgtgacttaacgattcgtggtgca
ggaaacttattaggagcacagcagcatggatttattgaatctgtagggtttgacctttat
tcacaaatgttgaaagaagccattgaagagagaaaaggagataagccgaaagagccgccg
ttccaagtggaaatggatgtgaaaatcgatgcttatatcccagagacgtatattcaagat
gctaaacaaaaaattgaaatgtataaaaggtttaaaggggccgagacagtcgaagattta
acagacttaaaagatgaaatgtttgatcggttcggagaatacccaaaacaagttgacttt
ttacttcgtttaacagcgattaaattgttagcaaatcaagaacgtgttgagcaaattatt
gaaacaaaagatcaagttgacctcattttaagttcagaaacgtcacaactgatggatggt
gctaagttatttgagttgactcataaacttggccgtgaagtcatccttggaacatcaggt
gaaaaaataaagttcgccattaaaacaaaaacattaagtgatgaacaagtattaacattt
attgaaaagattgttgaatctttacgtaagggacgaaaataa
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