Halalkalibacter krulwichiae: BkAM31D_00685
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Entry
BkAM31D_00685 CDS
T04947
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bkw
Halalkalibacter krulwichiae
Pathway
bkw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bkw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BkAM31D_00685 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bkw03021
]
BkAM31D_00685 (rpoC)
03400 DNA repair and recombination proteins [BR:
bkw03400
]
BkAM31D_00685 (rpoC)
Enzymes [BR:
bkw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BkAM31D_00685 (rpoC)
Transcription machinery [BR:
bkw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BkAM31D_00685 (rpoC)
DNA repair and recombination proteins [BR:
bkw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BkAM31D_00685 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ARK28506
UniProt:
A0A1X9M575
LinkDB
All DBs
Position
133578..137204
Genome browser
AA seq
1208 aa
AA seq
DB search
MIDVNNFEYMKIGLASPNKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRTYRDKYGRSFNAQMGAEAIRKLLA
DIDLEKEVGLLKEELVTAQGQRRTRAIKRLEVLEAFRNSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMFQCGLPKE
MALELFKPFVMKELVSKGLAHNIKSAKRKVERVQPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAKGEGSIFKDTNEALIAYQNGYVHLHSRVAIP
VASLNKPTFREDQNDKLLLTTVGKLIFNEILPETFPYINEPTSYNLEQKTPEKYIVSSST
DVRKHFEENDLVLPFKKGFLGNVIAEVFKKFAIAETSKMLDRMKELGFKYSTRAGITVGV
ADIVVLAEKKEILESAELKVEKILKQFRRGLITEEERYDRVISVWSEAKDVIQNKLMGTL
DRSNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVRSDDCGTDRGLAVQAIKEGNEIIENLY
DRLVGRVVFKTLKHPETGEVLIRKNELIHEDIAKAIVEAGVEEVTIRSVFTCDTRHGVCK
KCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEIDGEVVDFKEGDKREVTIRSEMETKTYAIPYGARLKVSVGDFVNFGE
PITEGSIDPKELLKVKGMSGVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVVD
AGETNVLPGSLIEIQQFNDENKTVLLEGKRPATGKPVLLGITKASLETDSFLSAASFQET
TRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPRYRHLNITSDYDNQVDPEAVDQPV
AEGALTHE
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataatttcgaatatatgaaaattggtcttgcttcaccaaacaaaatc
cgttcttggtcaagaggggaagttaagaaacctgaaacaatcaactatcgtacactaaaa
ccagaaaaagatggccttttctgtgaacgtattttcggtccgacaaaagactgggaatgt
cattgtggaaagtataagcgcgttcgctacaaaggtgttgtttgtgatcgctgtggagtg
gaagtgactcgtgcgaaagtacgtcgtgagcgtatggggcatattgaacttgctgcaccg
gtatcacatatttggtactttaaaggaattccaagtcgtatggggcttgttcttgacatg
tctccacgttcacttgaagaagttatctactttgcttcatatgttgtaacagacccaggt
gacacaccacttgaaaagaaacaactcttatcagagaaagaatatcgtacatatcgagat
aagtatggacgttcttttaatgcacaaatgggtgcagaagccattcgcaaattgcttgct
gatattgatttagagaaggaagttggattacttaaagaggaattagttacagctcaaggc
caacgccgtacacgtgcaattaagcgccttgaagtgttagaagcattccgtaattctggt
aatgagccatcatggatgattctcgatgtcctgccggtaattccgccagagcttcgtcca
atggttcagttagatggtggtcgatttgctacgtctgacttgaatgatttatatcgtcgt
gtgatcaaccgtaataatcgcttgaagcgtctactagatttaggtgctccaaacattatt
gttcaaaatgaaaaacgtatgcttcaagaagcagttgatgcattaattgataacggtcgt
cgtgggcgtccagttacaggaccgggaaaccgtccactaaaatcactttctcatatgcta
aaagggaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattcaggt
cgttcggttatcgtagtaggtccaaacttaaagatgttccaatgcgggcttccgaaagaa
atggcccttgagttattcaagccgtttgttatgaaggagcttgtaagcaaaggacttgca
cacaacattaagagtgcaaaacgaaaggtcgagcgagttcaaccggaagtttgggatgta
ttagaagaggttattcgtgagcacccggtattattaaaccgtgcaccaactcttcaccgc
ttaggaattcaagcgttcgaaccgacgctagtagaaggtcgtgccattaagcttcatccg
ctagtatgtacagcatataatgctgactttgatggtgaccaaatggcggttcacgtacct
ctttctgcggaagctcaagcggaagcacgtattttaatgcttgctgcacaaaacattttg
aatccaaaagacggaaaaccagttgttactccttcacaggatatggtacttggtaactac
tacttaacgttggagcgtaaggatgctaaaggtgaaggttcaatctttaaagatacgaat
gaagcgttaattgcttaccaaaacggatatgttcatttgcatagtcgtgtagcaattcca
gtcgcttctttaaacaagccgacattccgtgaagatcagaatgataaattgttattaacg
acagttggtaagttgatttttaacgagattttaccggaaacattcccgtatattaatgaa
ccaacgtcttataacttagaacaaaaaacacctgagaaatacattgtttcaagttcgaca
gatgtacgtaagcattttgaagaaaatgatctagtacttccatttaaaaaaggtttctta
ggaaacgttattgcagaagtatttaagaagtttgcaattgctgaaacttcaaaaatgtta
gaccggatgaaagaactaggctttaaatattctactcgtgccggtattactgttggggtt
gcggacatcgttgtattagctgagaagaaagaaattcttgaatcagctgaactaaaagtt
gaaaaaatccttaaacagttccgtcggggtttaatcacagaagaagagcgttatgatcgt
gttatctctgtatggagtgaagcgaaggatgttattcaaaataaattaatgggtacactt
gatcgcagtaacccaatctttatgatgagtgactctggagcccgtggtaacgcatcgaac
tttacacaacttgctggtatgcgtggtttgatggctaacccatctggacggatcattgaa
cttccgattaaatcaagtttccgtgagggactaacggtactcgagtactttatttcgaca
cacggtgctcgtaaaggtcttgccgatactgcacttaagactgccgattcaggttactta
acgcgtcgtcttgttgacgtagcgcaagatgtcattgttcgttctgatgattgtggaaca
gaccgtggtttagcggttcaagccattaaagaaggcaatgaaatcattgagaacttatac
gatcgtcttgtaggccgtgtcgtatttaagacgcttaagcacccagaaacaggcgaagta
ctaattagaaagaatgaattaattcacgaagatattgctaaggcaattgttgaagctggt
gttgaagaggtaacgattcgttcggtatttacttgtgatactcgtcacggtgtatgtaag
aagtgctatggccgtaacttggcaacaggtagtgatgttgaggttggagaagcggttggt
attatcgcggctcaatctatcggagaaccaggaacacagcttacaatgcgtactttccat
acaggtggggtagcaggggacgatatcactcaaggtcttccgcgtatccaagaattgttt
gaagcgcgtaatcctaaaggtcaagcggttatttctgagattgacggggaagtcgttgat
ttcaaagaaggagataagcgtgaggttactattagaagtgaaatggaaacaaagacttat
gccattccatatggtgctcgtctaaaagtttctgtaggtgattttgttaactttggagag
ccaatcactgaaggttcgattgatcctaaggaacttctaaaagtaaaagggatgagcggg
gtacaagaatacttacttcgtgaagtacaaaaagtttatcgtatgcaaggggtagaaatt
ggagataagcacgtagaggttatggttcgccaaatgcttcgcaaagtgcgtgttgttgat
gctggagaaacaaacgtactaccaggatctctaattgaaattcaacaatttaacgatgaa
aataaaacggtacttcttgaaggaaaacgtcctgccactggtaaaccagttttactaggg
attacaaaagcgtctcttgaaacagattcattcttatctgctgcttcattccaagaaaca
acacgcgtgttgacggatgctgcaattaaaggtaagcgtgatgaactacttggtttgaaa
gagaatgtaatcatcgggaaacttgttcctgctggtactgggatgccacgttaccgtcac
ttaaatattacttctgattatgataatcaggtggatccagaagcagttgatcaacctgtt
gcagaaggtgcattaactcacgaataa
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