Halalkalibacter krulwichiae: BkAM31D_14415
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Entry
BkAM31D_14415 CDS
T04947
Symbol
cshA_2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
bkw
Halalkalibacter krulwichiae
Pathway
bkw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bkw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BkAM31D_14415 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bkw03019
]
BkAM31D_14415 (cshA_2)
03009 Ribosome biogenesis [BR:
bkw03009
]
BkAM31D_14415 (cshA_2)
Messenger RNA biogenesis [BR:
bkw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BkAM31D_14415 (cshA_2)
Ribosome biogenesis [BR:
bkw03009
]
Prokaryotic type
rRNA helicases
BkAM31D_14415 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARK30936
UniProt:
A0A1X9MC01
LinkDB
All DBs
Position
complement(2608702..2610330)
Genome browser
AA seq
542 aa
AA seq
DB search
MTTYFNDFNISDSIKKAIKDMGFEEPSPIQEKAIPVILEGGDVIGQAQTGTGKTAAFGIP
VVDKVTSDRYVQALILTPTRELAIQVSGELQKLSIHKPIRTLPIYGGQSISHQIRALKQG
VQVVIGTPGRILDHLRRQTLKLDRVHTIVLDEADEMLDMGFVDDIEAILRQVNTERQTLL
FSATMPPAIKKLSHKYMSTPKTVTINKGEVTAPLIDQMYYKVLERNKIESLCRIIDSEDI
ELGILFCRTKKGVAELAEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFLIATDVA
ARGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQEIK
MSIPSQDVPTIEEVVVKQQGSWKKLISDAITGGGKEIELFAPLVEEVLEEYDARAVVSAL
LKMNFSPSTTTEESGYNFGDTGAAKGKVRFFINVGRNVNMTPKILIESISELVGIPGKTI
GKIDIFENFTFVEVPEEAAPFVYEALRYSRINGARVNLEPAKPRPKRERPPMRERRTTPS
RS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtattttaatgattttaatatctcagattcaattaagaaggcaattaaggat
atgggttttgaggaaccatcccccattcaagaaaaagcaattccagtcatcttggaaggg
ggagatgtaatcggccaagcacagacaggaacagggaaaacggcggcatttggtataccc
gttgttgacaaagttacttctgatcgctatgttcaagccctcattttaacgccaacgaga
gaacttgctattcaagtatctggtgaattacaaaaattatctattcataaaccaattcga
acactacctatatatggtggacaatcaattagtcatcaaattcgtgctttaaagcaaggg
gtacaagttgtaattggaacacctggaagaatccttgatcacttacgccgtcaaacgtta
aagttagatcgtgtgcatacaattgttctagatgaagctgatgaaatgcttgatatgggg
tttgttgatgatatcgaagcgatccttcgccaagtgaatacagagagacaaacgctttta
ttctcagcaacaatgccccctgcaataaagaaactgtcgcataaatatatgtcgactcct
aaaacagtaacaattaataaaggtgaagtaacagcaccattaatcgatcaaatgtattat
aaagttctagaacggaataaaattgagtcattatgccgtatcatcgatagtgaagacatt
gaacttggaattttgttctgtcgaacgaaaaaaggagtagctgagcttgcagaagctctt
caagcaagaggatatctcgccgatggtttgcacggtgatttaactcaatcacaacgagat
gctgtcatgaagaaattccgtgattcttcaatagaatttctcattgctacagatgtagca
gcgcgaggcattgatgttgataatgtgacacatgtgataaactacgatatccctcaagac
cctgagagttatgtacatcgaattggtcgaacgggacgagcaggtagaaaaggtttggct
ttaactttagtgacaccacgtgagatgaaacacttgcgttctatcgaacaagaaattaaa
atgagtattccatcacaagatgttcctactattgaagaagtggttgtaaagcaacaaggc
tcctggaaaaagttaatctcagatgcgatcacgggcggtggaaaagaaatagaattgttt
gccccgcttgtcgaagaagtattagaagaatatgatgctcgagctgtcgtttcagccctt
ttgaaaatgaacttttcaccatcgactacaactgaagaatctgggtataattttggtgac
acaggtgctgcgaaaggaaaggttcgattctttataaacgttggaagaaatgttaatatg
acaccgaaaatcttaattgaatcgatctctgaacttgttggcattcctggtaagacgatt
ggcaagatagatatttttgaaaattttacctttgtcgaagttccagaagaagcagcgccg
tttgtatatgaagcacttcgttattctcgaattaacggagctagagtgaatttagaacct
gcaaaacctcgtccgaagcgtgagcgaccaccaatgcgcgaacgccggacaactccaagc
cgtagctaa
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