Bremia lactucae (lettuce downy mildew): 94343996
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Entry
94343996 CDS
T10371
Symbol
CCR75_000217
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
blac Bremia lactucae (lettuce downy mildew)
Pathway
blac03018
RNA degradation
Brite
Enzymes [BR:
blac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
94343996 (CCR75_000217)
Messenger RNA biogenesis [BR:
blac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
94343996 (CCR75_000217)
Spliceosome [BR:
blac03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
94343996 (CCR75_000217)
Complex C
U4/U6.U5 tri-SnRNP related factors
94343996 (CCR75_000217)
Ribosome biogenesis [BR:
blac03009
]
Eukaryotic type
Pre-60S particles
Helicases
94343996 (CCR75_000217)
Transfer RNA biogenesis [BR:
blac03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
94343996 (CCR75_000217)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
94343996
NCBI-ProteinID:
XP_067814490
UniProt:
A0A976FDZ1
LinkDB
All DBs
Position
LG19:190660..193854
Genome browser
AA seq
1064 aa
AA seq
DB search
MDEELDLFGAFDDPSATLTTEELAKTSLKRKTASTTSSYDDKSSQPPAKKQQNEGRPIST
TLQIVEGKRIDATPEESGDKHLASVVSTGTQQKNLISFSVYPPDYEVKPTADAAAKNPAK
TYPFTLDPFQQQAVNYIEAGESVLVSAHTSAGKTAVAEYAIAKSLRDKQRVIYTSPIKAL
SNQKYRDLEEEFGDVGLMTGDITINPSATCLIMTTEILRSMLYRGSEVMREVAWVIYDEI
HYMRDKERGVVWEESIILLPHKVRFVFLSATIPNSKEFAGWICHIHHQPCHVVYTDYRPT
PLQHYLFPAGGSGLHLVVDEKGKFREDNFQKAIATLSASSVEGDAFDLSSHGSNAKRRKA
PKSNPKKKVGSDVFRIVKLIMERQYDPVIIFSFSKRDCEGYAMLMSKLDFNTEEEKQSVD
QLFKNAMDSLSDDDRALPQVDSILPLLRRGIGIHHGGLLPILKEVIEILFGEGLLKCLFA
TETFSMGLNMPAKTVVFTNCQKYDGHAFRWITAGEYIQMSGRAGRRSLDARGIVIQMLSE
QMKPEDAKRILYGQADPLLSTFHLGYNMLLNLMRVEDADPEYMIKQSFHQFQNEQAAPAL
EEELARMQEEKNQLVIKNEEEVAQYYYLSRSLVRLKEEFLAIRNKPDVVVRFLNGGRLVK
LYCPQSDDGSRNVQWDWGVIVNFTTKNATNSTSATPDTIVHVLLNCVKTNGTAKSNEATN
NSTTSELPTPAPEGMMGLSASLECEMKICPVPLEMLDLISSLRVYIPTDLRTLDSRQAVG
KSVREVLRRFPQGVPLLDPREDMDIKDEQFMRVIKRSIEAEEKLKNSPFHNAKDKDARFA
LYNLKMESEAKMRELERKIQESKSLVLRDDLRHRRRVLRRLEFVDKEGVIQRKGRTACEV
STTDELLVTEMIFNGQFNDLSVNDTVALLSCLINTEKRKDSDKPPQAKGLEVPVRQLRET
AQRIAKVMQDAKITIDVDEYAGVFNTSLVDVVIAWCQGAKFSQICKMSDAFEGTIIRCLR
RLEELLRQLTLAAHSIGDVELEKKFDEGGKKLKRDIVFAASLYL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaattggacttgttcggcgcatttgacgatccatctgcaacattaacaaca
gaagaactagcgaaaacatcactaaagcgtaaaactgcatccaccacgtcttcatacgac
gacaagtcgtcacaaccacctgcaaagaagcaacaaaatgaaggtcgtccgatctccact
actttacaaattgtggagggaaaacgcattgacgcaactcctgaagagagcggcgacaag
catcttgccagtgtagtgtcgactggcacacagcagaagaacctgatctctttttccgtg
tacccgcctgattatgaggtaaaacccacggctgatgcagcggctaagaatcccgccaag
acgtatccattcacgctggaccctttccagcagcaagctgtgaattatattgaagctggg
gagtctgtgctcgtgtcagctcacacgtcggctggtaaaaccgcggtggccgagtatgcg
attgctaaaagtcttcgagacaagcagcgagtgatctacacgtctccaattaaagctctt
agtaatcagaagtatcgagacctggaagaagagtttggcgatgtgggtctcatgactggc
gacattactataaatccctcagccacgtgcttaatcatgacgacagagattctccgaagt
atgctctatcggggttctgaagtcatgcgagaagtggcatgggtcatttacgatgaaatt
cactacatgagagacaaggaacgaggtgtggtttgggaggagagtattattttattgccg
cacaaggtgcgatttgtgtttctgtcggccacgattccaaattccaaggagtttgctgga
tggatctgtcacattcaccaccagccgtgccacgtcgtgtacactgactaccgtccaaca
ccgctgcaacactatctattcccagcgggaggtagtggcttgcatttagtagtcgacgag
aagggaaaatttcgagaagataattttcaaaaagccattgcaaccttgtcagcctcttcg
gttgagggggatgcatttgatttgtcgtcgcatggaagcaatgcaaagcgacgtaaagca
ccaaaaagcaatccaaagaagaaggttggctcggacgtgtttcgtattgtcaagctcatt
atggagcgacagtatgatccggtgattatcttttcctttagtaaacgggattgcgaaggc
tatgctatgctcatgtcgaagctcgatttcaatacggaagaagaaaagcaatccgtagat
cagctctttaagaacgcgatggattcgttatcggacgatgatcgcgctcttcctcaagtt
gactcgattctgccattgcttcgtcgaggaattggcattcatcacggtggtttgttgccg
attttgaaggaagtaattgagattctctttggagaaggtttgctaaagtgtctttttgct
actgagacgttctcgatgggtttaaacatgcctgccaagacagtagtctttacaaattgt
caaaagtatgacggtcacgcctttcgctggattactgctggtgaatacatccaaatgtct
ggacgcgctggtcggcgatcgcttgatgcacgcggtatcgtgatacaaatgcttagtgag
cagatgaagccagaggatgcgaaacgtatcctatatggccaagccgatccactactcagt
acatttcatcttggctacaatatgctgttgaatttgatgcgagttgaagacgctgatccg
gagtatatgatcaagcagtcatttcatcaatttcagaacgagcaagcagcgccagcatta
gaagaagagcttgcgcgtatgcaagaagaaaagaatcagcttgtgattaagaacgaagag
gaggtcgctcagtattattacctttcgaggtcgctcgtacgactgaaagaagagtttttg
gcaattcgcaacaagcctgacgtcgttgtgcgctttcttaatggaggtcgcttagtgaag
ctctattgccctcagagtgacgatggatcgagaaatgttcagtgggattggggcgtcatt
gtcaattttacgacgaaaaatgccactaattcgacttcagcaacgcctgatacgatcgtt
catgtgcttttgaactgtgttaaaaccaatggcacggcaaaatcgaatgaggccacgaac
aacagcacaacctcagagctacctactccagcgcctgagggtatgatgggtctctcggct
tctctcgagtgcgaaatgaagatttgccccgttccgttagaaatgcttgatctcatctcg
tcgttgcgcgtgtatattcctacggacttgcggacacttgatagccgtcaagcagtgggc
aagtcggttcgggaagtactgcgtcgcttccctcaaggcgttcccttactcgaccctcgc
gaagatatggacattaaagatgagcaatttatgcgagtgattaaaaggtcaatcgaagcc
gaagagaaactcaaaaactccccttttcataatgcaaaggataaggacgcgcggtttgct
ttgtacaatttgaagatggagagcgaagccaagatgcgtgagttagagcgtaaaattcaa
gagtccaagtcactggtgttgcgtgacgatttacgccatcgtcgacgagtattgcgacga
ctcgaatttgttgacaaggaaggcgtgattcaacgcaagggccgcaccgcatgtgaggtc
tcgacaaccgacgaattgcttgtgacagagatgattttcaatggccaatttaatgatttg
tctgtaaatgatacagtcgcacttttgagctgcttgatcaatacggagaagagaaaagac
agtgataaaccgcctcaagccaaaggtttagaggtgcccgttcgtcagctgcgtgagaca
gctcaacgcattgcaaaagtgatgcaggatgccaaaattaccattgatgtcgacgagtac
gctggggtgtttaatacgagccttgtggatgtcgtgattgcgtggtgtcagggtgccaaa
ttttcacaaatttgtaaaatgtcggacgcatttgaaggtacaattattcgatgcttgcgc
cgtttggaagaattgctgcggcagctgacactagctgcgcactcgattggtgatgttgag
ctggagaaaaaatttgacgaaggaggcaagaaactcaagcgagacattgtctttgctgct
tccctttatctgtag
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