Bremia lactucae (lettuce downy mildew): 94344749
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Entry
94344749 CDS
T10371
Symbol
CCR75_000973
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
blac Bremia lactucae (lettuce downy mildew)
Pathway
blac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
blac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94344749 (CCR75_000973)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
blac03041
]
94344749 (CCR75_000973)
Enzymes [BR:
blac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
94344749 (CCR75_000973)
Spliceosome [BR:
blac03041
]
Complex C
Other components
Step II factors
94344749 (CCR75_000973)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
S1
DEAD
AAA_22
AAA_19
Cas3-like_C_2
GIPC1_GH2
nSTAND3
PhoH
OB_RRP5_4th
nSTAND_NTPase5
ABC_tran
Sigma54_activ_2
AAA_30
TsaE
AAA_7
NB-ARC
AAA_16
Motif
Other DBs
NCBI-GeneID:
94344749
NCBI-ProteinID:
XP_067818081
UniProt:
A0A976IE51
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All DBs
Position
LG6:5770496..5773975
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AA seq
1159 aa
AA seq
DB search
MEKLEELSLISKVCQALENHLGMSDKTLAEFVIDLVRRSSSYAGFLALIETDELPLPSAL
AENLYRIVQTMAPHKMNQNTTSLSNTNNTSKNTKRLNQLDEKLTAADIIGVSINDEEDTP
STFRHHETVKNHSSSRMKERDRYGRDRSRTREEDYNRRKRSRSQGRDRRSRDRRDQDMYR
SSRSRRKYNQKDDVSSREIELYGIYNGRVSKVMDFGIFVELDGFSNDQKKEGLVHVSNVS
IHRVSNVKDVAKRGDRVKVKLISISGMKLSLSMRDVDQQSGDDLMPQRSSTGIERARQEN
KALDARSWINTSAPGMQRSQFDEDETKPQRAVKRMSSPERWEVQQLINSGVLSVEDYPTF
DDEHGLLNTETTEEDFEVELNEDEPVFLRGQTHISRELSPVKIVKNPDGSMQRAAMTQSN
LAKERREMRQTQANQLIDSIPKDLNRPWEDPMPEAGERHFAQELRGINMSSTFELPEWKQ
KSVGKNLSYGIVSTKTILEQRESLPVFKLKRQLMQAIAENQILVVIGETGSGKTTQMTQY
MAEMGLTSTGIIGCTQPRRVAASSVAKRVAEEFGCALGQEVGYSMRFEDVTSPETVIKYM
TEGMLLREYLADPTLSKYSALMLDEAHERTINTDVLFGLLKDLVRTRKDLKIIVTSATLD
AEKFSRYYFDCPIFTIPGRTFPVEILYTKEPELDYLDASLLCVMQIHLSEPEGDILLFLT
GQEEIDTACEVLYQRVKALQERALAPELIILPVYGALPSEMQSRIFEPAPKGSRKCVVAT
NIAEASLTIDGIYYVVDPGFCKQNAFNSKIGMDSLVVVPCSQASARQRAGRAGRTGPGKC
YRLYTENAYKNEMLPTTVPEIQRANLGAVVLQLKAMGINDLMGFDFMDPPPQDALVMALE
NLYALGALDDEGLLTRLGKKMAEFPVEPKNAKVLLTSVVLGCAEEVLTIVAMLSVETVFF
RPKEKQAQADQKKAKFHQPEGDHLTLLAVYEAWANSKFSNPWCYDNFIQARAIRRAQDVR
KQLLSILDRYKMDVVSCGKNFNKVRRAIVAGYFANTAKKDPQEGYRTMVEGQPVYIHPSS
ALFNKSPEWVLYHELVLTTKEYMRNIMTIEPKWLVELAPAFFKKGDPTKLSKRKRNEKIE
PLFDRFNPPDSWRLSKRRN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctcgaggaactaagtctcatctccaaggtgtgtcaggcgctcgagaaccac
cttggcatgagcgataagaccctcgctgagttcgttatcgatttagtgcgtaggagctcg
agttacgcaggtttcttagcgttaatcgagacggacgagttaccgctgccatccgcgcta
gccgagaatctttaccgcatcgtgcaaacaatggcaccgcacaaaatgaaccaaaataca
acgagcctatctaacactaataatacaagtaagaatacaaagcgtttgaatcaactcgac
gaaaagctgacggctgcggatattatcggtgtatcgattaacgacgaagaggacactcca
tccacttttcgacatcatgagactgtgaagaatcattcttccagtcgtatgaaagaacgt
gatcgatatggacgtgaccgaagccgtacacgcgaagaagattataatcgaagaaaacga
tcgcgatcccaaggccgggatcgaagatctcgagatcgtcgagatcaagacatgtaccga
tcgtctcgatctcgtcgaaagtacaatcaaaaggatgacgtttcatctcgagagattgag
ctctatggtatttacaatggtcgcgtctcgaaagtcatggactttggcatttttgtcgaa
ctcgacgggttttcaaacgaccaaaagaaagaaggcttggttcatgtgtcgaatgtatcg
attcatcgcgttagcaatgtaaaagacgttgcaaaacgtggtgatcgtgttaaagtaaag
ttgatttccatctcgggtatgaaattatccttgtccatgcgtgacgtggatcagcaaagt
ggtgacgatttaatgccccagcgctcaagtacgggaatcgagcgtgcacgacaagagaac
aaagcgttggacgcacgttcgtggattaatacgtctgctccagggatgcagcgatctcaa
tttgacgaggacgagacaaaaccacagcgtgcagtcaaacgcatgtcgtcacccgaacga
tgggaagttcagcaattaattaactcgggtgtgctctcggtggaagattatccaacgttt
gatgacgaacatggtctattgaataccgagacaaccgaagaagattttgaagtcgaatta
aatgaagacgaaccggtgtttttgcgtggacagacgcatataagtcgagaattgtctcct
gtgaagattgtcaagaatccagatggatccatgcagcgtgccgccatgacacagtccaac
ttggccaaagaacgtcgagaaatgcgtcagactcaagcgaatcaattgattgattcgatt
ccgaaagatttgaatcgaccgtgggaagatcccatgcctgaggctggcgaacgccacttt
gcacaagaattgcgtggtattaatatgagctcgacgtttgagctaccagaatggaaacaa
aagtctgtgggtaagaatctatcgtacggcattgtgtcgactaaaaccattcttgaacag
cgtgaaagcttgccggttttcaagctaaaacgccaattaatgcaagctattgcggagaac
caaatacttgtcgttattggggaaactggttcaggaaaaacgacgcaaatgacgcagtat
atggccgagatgggattgacttccacgggtattattggatgtacgcaaccacgtcgtgtt
gctgcttcgtccgtggcaaagcgtgtggccgaggaatttggctgtgcacttggacaggaa
gttgggtattccatgcgatttgaagatgttacgagtcccgagaccgtgatcaagtacatg
acggaaggaatgctgcttcgcgaatatctcgctgatccgacgttgtccaagtatagtgct
ttaatgcttgatgaagcccacgaacgaacgattaataccgacgttctttttggactgctg
aaagaccttgtgcgaacacgaaaagacctcaagattatcgtcacatcggctacgctagat
gcggagaaattctcacgctattactttgattgtcccatctttacgattccaggaaggaca
tttcctgtcgagattctctatacgaaagaacccgaactcgattacttggatgcttctcta
ttgtgtgtaatgcaaattcacttgtccgaaccggaaggggatattttattgttcttaacg
ggacaagaagagattgatacggcttgcgaagtgctctatcagcgcgtaaaggcgttgcaa
gaacgagcattggcaccagaactcatcattctaccagtctacggagcccttccttctgaa
atgcagtcgcggatttttgaacctgcacccaaaggttctcgcaaatgcgtcgttgcgacg
aatattgccgaggcctcgctaacaattgatggcatctactacgttgtcgatcctggattt
tgcaaacagaatgcctttaactcgaaaattggcatggattcgttagtagtcgtaccatgc
tctcaagcttcagctcgacaacgtgcaggccgtgcaggtcgcacaggtccagggaaatgc
tatcgattgtacacggagaatgcgtacaagaatgagatgctgccaacgactgtacctgag
attcagcgagcaaatctcggcgccgtggtgctgcaattaaaagccatgggcattaatgac
ctcatgggattcgactttatggacccaccaccacaagatgcacttgtgatggccctggag
aatttatacgcattgggtgcattagacgacgaaggattgttaacgcgcttgggcaagaaa
atggccgagtttcccgtggaaccgaaaaacgccaaggttttgctaacctctgtcgtacta
ggatgtgccgaagaagtattgacaattgtggcaatgttatcggttgagacagtctttttt
cgtccgaaagaaaagcaagcacaagcggatcaaaagaaggccaagtttcatcaaccagaa
ggcgatcacttgacattactagcagtgtatgaagcctgggcaaactccaagttttcgaat
ccgtggtgttatgacaactttattcaagctcgagccattcgtcgagctcaagacgtgcga
aaacaattgctctcgattcttgatcgctacaaaatggacgttgtctcgtgtggcaaaaac
tttaataaagtccgacgagctattgtcgcaggctactttgccaacacggccaagaaagat
ccgcaagaaggctaccggacgatggtcgaaggtcagcccgtgtacattcatccatcgagt
gctttgtttaacaaaagtcccgagtgggttttgtaccacgaacttgtgcttacgaccaag
gagtatatgcggaatatcatgacaattgagcccaagtggctcgtggaacttgctcctgct
ttttttaagaaaggagatccgaccaaactctccaagcgtaagcgaaacgaaaagatcgaa
ccgctctttgatcgatttaatccaccggattcgtggcgtcttagtaagcgtagaaattag
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