Bremia lactucae (lettuce downy mildew): 94346267
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Entry
94346267 CDS
T10371
Symbol
CCR75_002499
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
blac Bremia lactucae (lettuce downy mildew)
Pathway
blac03013
Nucleocytoplasmic transport
blac03015
mRNA surveillance pathway
blac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
blac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94346267 (CCR75_002499)
09122 Translation
03013 Nucleocytoplasmic transport
94346267 (CCR75_002499)
03015 mRNA surveillance pathway
94346267 (CCR75_002499)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blac03019
]
94346267 (CCR75_002499)
03041 Spliceosome [BR:
blac03041
]
94346267 (CCR75_002499)
03009 Ribosome biogenesis [BR:
blac03009
]
94346267 (CCR75_002499)
03012 Translation factors [BR:
blac03012
]
94346267 (CCR75_002499)
Enzymes [BR:
blac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
94346267 (CCR75_002499)
Messenger RNA biogenesis [BR:
blac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
94346267 (CCR75_002499)
mRNA cycle factors
Stress granule specific factors
94346267 (CCR75_002499)
Spliceosome [BR:
blac03041
]
Complex C
Other components
EJC/TREX
94346267 (CCR75_002499)
Ribosome biogenesis [BR:
blac03009
]
Eukaryotic type
90S particles
Helicases
94346267 (CCR75_002499)
Translation factors [BR:
blac03012
]
Eukaryotic type
Initiation factors
eIF-4
94346267 (CCR75_002499)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
SLFN-g3_helicase
TniB
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
94346267
NCBI-ProteinID:
XP_067820973
UniProt:
A0A976IH24
LinkDB
All DBs
Position
LG5:2147510..2149417
Genome browser
AA seq
406 aa
AA seq
DB search
MPREDTKRRTRLVDEDDEETVEFTTSKDISVFPTFEAMGLKEDLLRGIYSYGFEKPSAIQ
QRAIKPAVQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKV
VLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLV
IDEADEMLNKGFKEQIYDIYRYLPPATQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDE
LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMREANFTVS
AMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcgaagacactaagcgacgtacgcgtctggttgacgaagatgacgaagagacg
gtagaattcacgacgtcgaaggacatctctgttttccccacgtttgaggccatgggtcta
aaggaagatcttttgcgaggcatttactcctacggctttgaaaaaccgtcggcgattcag
caacgtgcgataaagcctgcagttcaaggccgcgatctgattgcccagtcacagtccggc
acgggcaaaactgccgtgttttccatctcaattcttcagtccttggatacgtctagtaac
gaaacgcaagcgctcgtgatctcgccgactcgtgagctggccgagcagacacaaaaggtc
gttctggctctgggggatttcatgaatgtccagtgccatgcgtgtattggtggaaaaagc
gtgggtgaagacattcgtcgtctcgattttggtgtacaagtggtgtcggggacccctggt
cgaatttttgacatgattcgtcggcgcaacttacgaacgcgcaacataaagatgcttgta
attgacgaggccgacgagatgctcaataaaggctttaaagagcaaatttacgacatttac
cggtatctcccgcccgcgacgcaagtgctgctcgtatcggccacaatgcctcaggaagtg
ctcgatttgacccgtaaattcatgaacgagcctgtcaaagtcctcgtgaaacgcgatgag
ctgacattggagggcattaaacagttttttgtggccgttgagaaggaagagtggaaattt
gatacgctctgtgatctctacgacacgctcacgatcacacaagccgtgattttttgcaac
acaaagcgtaaagtggactggctcacggccaagatgcgcgaagcaaactttaccgtgtcg
gccatgcacggggacatgccgcagaaagagcgggatgctatcatgcaagagtttcggtcc
ggtggctctcgcgtgctcataacgactgatgtctggggccgtggattggacgttcagcaa
gtgtcattggtcatttgctatgaccttccaaacaatcgtgagctgtatatccatcgcatt
ggccgttccggtcgttttggacgcaagggcgtggctattaactttgttaaggatgacgac
attcgtatcttgcgtgatattgaacaatattatagcacgcagattgacgaaatgcccatg
aacgtagcagatctaatctaa
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