Bremia lactucae (lettuce downy mildew): 94348038
Help
Entry
94348038 CDS
T10371
Symbol
CCR75_004281
Name
(RefSeq) hypothetical protein
KO
K12830
splicing factor 3B subunit 3
Organism
blac Bremia lactucae (lettuce downy mildew)
Pathway
blac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
blac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94348038 (CCR75_004281)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blac03021
]
94348038 (CCR75_004281)
03041 Spliceosome [BR:
blac03041
]
94348038 (CCR75_004281)
03036 Chromosome and associated proteins [BR:
blac03036
]
94348038 (CCR75_004281)
Transcription machinery [BR:
blac03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
94348038 (CCR75_004281)
Spliceosome [BR:
blac03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
94348038 (CCR75_004281)
Complex B
94348038 (CCR75_004281)
Complex C
U2 SnRNP specific factors
94348038 (CCR75_004281)
Chromosome and associated proteins [BR:
blac03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
94348038 (CCR75_004281)
TFTC complex
94348038 (CCR75_004281)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
94348038
NCBI-ProteinID:
XP_067821707
UniProt:
A0A976II50
LinkDB
All DBs
Position
LG2:658417..662010
Genome browser
AA seq
1197 aa
AA seq
DB search
MHLLNLTLQPPTGVHIAVYGNFSAPQAQEFVVVRGDVLQLLRPDEAGRLEVIISTQVFGV
VRALQPFRLTGGERDYLVVGSDSGKITVIEVNPTACRFEARQSETYGKTGCRRITPGQYL
AADPKGRAVLIGAVEKQQLVYVMNRDASSCLTISSPLEAHRANAIHLSVIGLDVGFENPI
FACLELDYADADADPSGQAAQEAVKTLVYYELDLGLNHVTRRWSEQVLRSANMLVAIPGG
GDGPGGVLVLGENTIQYKNEGHSELTCAIPRRAGEDREILIVSAATHKQRDLFFVLLQSE
LGDLYKISLEYSGNTVDEIKAQFFDTVPVACSLCITKTGLLFCASEFSNHYLFQFLSIGE
GDDTAKCSSLAMDATNSSTFPLRKLTNLALASSSPSLSPVTQLLVDDLANEQTPQMYALC
GNSNRSSLRVLRHGLPITEMAASALPGIAKAVWCLKESYSDPYDKYIVVSFEDATLVLEV
GETVEEVAQSGFLRDHGSLLVTLLEDDSKLQIHTNGIRHVPKFQPVTEWKAPGKKVIQHC
AANSRQVVISLAGGEIIYFELGQAGELAEKGKLDLGFEVCSLDLGEVPEGRQRFQFMAVG
SWDNTVRILSLDPNELFRQKSTLALTSHPHTLCLAQLQNEPSTPDSEYSSEALFLSIGLN
NGVLQQSQIDPITATLTNSRSRFLGTLPVKLFRVVVEGKRSILALSSRAWISYFQQTRRH
LTPLSCELLSCASSFDSEQCPGGVVALTNEGMKILTIDQLGDTFNQQKCNLRYTPRKAVI
HSPSRRLVVIESDHNEYGAAYKRSHGLHIPDVRNANENDDEAEDDINEALLFPRGPIPTG
KDKWASCVRIIDPVSCQSVVCEELDEDECARSIAACVFHDRGGEAFIIVGTVKKMQLHPQ
KAPSGGCLRVYRLVEGMQLVLVHATEIDDIPHAMCEFQGRLLVSVGRALRIYDLGKKKML
RKCENRNFPSILIELKAAGDRIYASDLHESFHFVKYKKEENQLVIFADDCVPRFITSSVL
LDYDTLCGADKFGNIFVSRLPSEVSDEVDNPTGNRILWDSGLLNGAPNKLEQIAQYHVGD
VVTSMVRTSLVPGGIEAIVYATIMGRIGVLIPFTSREDVDFYTHLEMYMRQEQPPLCGRD
HLSYRSYFIPVKNVTDGDLCEQYSTLSVEKQASVAEDLDRTPAEVLKKLEDIRNRLL
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcctgaatttgacgctgcagccgcccacgggcgtgcacatagccgtgtatggt
aacttttcagcaccacaagcgcaagagtttgtggtagtgcgtggcgatgtgctgcagctt
ctgcgtccggatgaggcggggcgtttggaggtcataatttcaacccaggtctttggagtt
gtgcgtgctctccagcctttccgactaacagggggtgagcgagactacctcgtagttggg
tcggactcaggaaaaattactgtcattgaggtgaacccaacagcttgccgattcgaggcc
cgacagagcgaaacttacggtaaaactggctgcagacgcatcacaccgggccagtacctc
gctgccgatcctaaaggccgcgccgtcctcatcggggccgtagaaaaacagcagttggtc
tatgttatgaatcgcgacgcctccagttgcctaactatctcatcaccgttggaggcgcat
cgcgctaacgccattcacttgagtgtcatagggctcgatgtaggctttgagaaccccatt
ttcgcttgcttggagcttgattacgctgacgctgatgcagatccaagtggccaagccgct
caagaagctgtaaagacgcttgtgtattatgaattagacctaggacttaaccacgtgacg
agacgatggagtgaacaggtcttaagaagtgccaatatgcttgtggctattcctggagga
ggtgacggaccgggtggggtgttagttctaggagagaacacgatacagtacaagaacgaa
ggtcattccgagttgacatgtgctattccaagacgtgcaggtgaagacagagaaatcctt
attgtctcggctgctacacacaagcagcgagatttattctttgtcctattacagtccgag
ctcggagatctttacaagatatcactcgagtactcgggcaacaccgtggatgaaatcaag
gctcagttctttgatactgtcccagtagcctgctctttgtgtatcaccaagacaggtttg
cttttctgtgcgtccgagttctcaaaccactatttattccagtttttaagtattggcgag
ggagatgatacagctaaatgctcgagcttggcgatggatgcaaccaactcatcaacgttt
ccgctgcgtaaattgacaaacttagcactagccagctcatctccaagtttgagccccgta
acgcagctgctggttgatgacttagctaatgaacagactccacaaatgtacgcgctttgt
ggaaacagtaatcgctcgtcgctacgtgtattgcgtcacggccttccgatcacggagatg
gcagcaagtgcgcttccaggtattgccaaggccgtctggtgcttaaaagaatcatactca
gacccgtacgacaagtatattgttgttagttttgaagatgcgacattggttcttgaagtt
ggcgagactgttgaagaagtcgctcagtctggcttccttcgtgaccatggatcattgcta
gtaacgcttcttgaagacgactcgaaactgcaaattcacacaaacggaatccgacatgta
ccaaagtttcagcccgttacggagtggaaggcgccaggtaagaaggttattcagcattgt
gctgcaaactctcgtcaagttgtgatctcgctcgctggtggcgaaattatttactttgag
ctgggccaggcgggggagctagcagaaaagggtaagctcgatcttggctttgaagtctgc
agcttagatttaggagaagtcccagaaggtcgacaacgttttcagtttatggcggtagga
agctgggataacaccgtccgtatcttatcgctggatccaaatgaactttttcggcaaaaa
tcaacgttagcattgacatcgcaccctcacactctttgccttgcccagttgcagaatgaa
ccatcaacccctgattccgagtattcgtccgaagctctgttcttaagtattggtttgaac
aacggtgttcttcagcaatcgcagatcgaccccattacagctactttaacaaattctcgc
tcgcgctttttgggaacgcttccagtaaaattgtttcgagttgtggtcgaaggaaagcgc
tcaatccttgcgctttccagtcgtgcatggatatcatactttcagcagacgcgtagacac
ctcaccccactctcgtgcgaattactttcctgcgcaagctcgttcgactcggagcaatgc
cccggaggcgttgtcgcactgacaaatgaaggaatgaaaattctgacaattgatcagctc
ggggatacttttaatcagcaaaagtgcaatttgcgctacacgccacgcaaggcagtgatt
cactcaccttcacgacgactagttgtgattgaaagtgatcacaatgaatacggggctgcg
tacaagagatcacatggtctgcacattccggacgttcgaaatgcgaacgaaaacgacgat
gaagcagaagatgatatcaacgaggcgctattgtttcctcgtggccccatacctactggg
aaagataagtgggcgtcgtgtgtccgaataattgatccagtgtcatgtcaatcagtggtg
tgtgaagaattggatgaagacgaatgtgcacgcagtattgctgcttgtgtcttccatgat
cgtggaggagaagcgttcattattgtaggcactgtcaaaaagatgcagttgcaccctcag
aaagcaccttctggaggctgtttgcgcgtgtatcgccttgtcgaaggcatgcaactcgtg
cttgttcacgcaactgagattgacgacattccgcatgctatgtgcgaatttcaaggtcgt
ctgcttgtctctgtcggtcgagcactacgaatttatgacttgggcaagaaaaaaatgttg
cgcaagtgtgaaaatcgaaattttccttcgattttgatcgagttgaaggctgctggcgat
cgtatttacgcctcagatctgcacgaatcgttccattttgtgaaatacaagaaagaagag
aaccaattggtgatctttgcagatgactgtgtgccgcggtttatcactagcagcgtactg
ttagattacgacacgttgtgtggagctgacaaatttggcaacatattcgtatctcgactt
ccgtccgaagtttcagatgaagtcgacaatccgacgggcaatcgtatcctgtgggactcc
ggtcttttgaatggtgcacccaacaagctagaacagatagcacagtatcacgtgggggat
gtagttactagcatggtacgtacgagcttggttcctggaggcattgaggcaattgtctat
gcaactattatgggccgtattggtgttctcatcccatttacttcgcgtgaggatgtggat
ttctacactcacttggagatgtacatgcgccaggaacagcccccgctttgcggccgcgat
cacctgtcgtatcggtcgtactttattcccgtaaagaacgtcacggatggcgatctgtgc
gaacaatatagcactcttagcgtggaaaagcaagcaagcgtggcggaggatcttgatcgg
acgcccgccgaagtgctgaaaaagctggaggacattcgcaaccgtctcttgtaa
DBGET
integrated database retrieval system
