KEGG   Bremia lactucae (lettuce downy mildew): 94350188
Entry
94350188          CDS       T10371                                 
Symbol
CCR75_006447
Name
(RefSeq) hypothetical protein
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
blac  Bremia lactucae (lettuce downy mildew)
Pathway
blac03040  Spliceosome
blac04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:blac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    94350188 (CCR75_006447)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    94350188 (CCR75_006447)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:blac03041]
    94350188 (CCR75_006447)
   04121 Ubiquitin system [BR:blac04121]
    94350188 (CCR75_006447)
   03400 DNA repair and recombination proteins [BR:blac03400]
    94350188 (CCR75_006447)
Enzymes [BR:blac01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     94350188 (CCR75_006447)
Spliceosome [BR:blac03041]
 Complex B
  Other components
   Prp19 complex
    94350188 (CCR75_006447)
 Complex C
   Prp19-CDC5 complex
    94350188 (CCR75_006447)
Ubiquitin system [BR:blac04121]
 Ubiquitin ligases (E3)
  U-box type E3
   94350188 (CCR75_006447)
DNA repair and recombination proteins [BR:blac03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    94350188 (CCR75_006447)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_WDHD1_1st Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WDR55 EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_NOL10_N ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_Aladin WD40_MABP1-WDR62_1st WD40_RFWD3 PAC11 NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_WDR41 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_HPS5 PROPPIN Beta-prop_WDR35_TULP_N zf-Nse ASA1 Beta-prop_VPS8 Beta-prop_SCAP Beta-prop_SPT8 Ge1_WD40 Beta-prop_WDR75_2nd WDR54 Beta-prop_ACSF4 U-box FKBP15 Beta-prop_IP5PC_F RBSN_mid Tricorn_2nd zf-C3HC4_2 DUF7899 CCDC113_CCDC96_CC
Other DBs
NCBI-GeneID: 94350188
NCBI-ProteinID: XP_067819317
UniProt: A0A976FN51
LinkDB
Position
LG15:complement(<992116..>993672)
AA seq 518 aa
MLCCLSGQVPVEPVVSIKSGHVFEKRLLLKYLEQNQQHCPITNVELNENEDLLALHAAPM
AKASSATPVSLAPEAASIPQLLATFQNEWDAVMLETFTLKQHLEQTRQELSHALYQYDAA
CRVIARLNAENATCKERMAQLVSGKQDDVEMQDGTALAPEVLSTIEAKQKELAKKRKEFK
KQEGPQRAALLANIIDWHVVSSHTLHDSDKPGVTCVAIDSKQPTRVATAGVDKHAKIFDT
VKQQVVATLSGHTKKLSHVSFHPTADVLLTASHDKTVKLWTLQGDKSSVACTFEGFQDAV
TSVSIHPTGNFVLSGSLDATWAIHDARRGQLLTRHTLHGELAMPAISAGQPTKSTNETRC
ACFHPDGGIFGTAAKSKLVQMWAMTSLSNVVTFEGHAAPVTALSFSENGYHLASGSEDGV
VKLWDLRKAASFGEIDFKKEHPTLHVGAIYSMNFDASGSHLAVASAQSVQVLKEVRKNQW
EVIKSLEDHTATVTSVQFAPDSSYLASTSMDRSLKIYR
NT seq 1557 nt   +upstreamnt  +downstreamnt
atgctgtgttgtcttagcggccaagtgcctgttgagcctgtggtttcgatcaaatcgggt
cacgtctttgaaaagcgtctgttgcttaagtacctggagcaaaaccagcagcattgcccc
atcacgaacgtcgagctcaatgagaatgaggatttattagcgctgcatgccgccccgatg
gccaaagcctcgtcggccacgcccgtatctcttgcgcctgaagcagctagcattccgcag
ctgctagccacatttcaaaatgaatgggacgctgtgatgcttgaaacgttcacgctcaag
caacacctggagcaaacgcgtcaggagctaagtcacgcattgtaccaatacgacgccgcg
tgtcgcgtcattgcgcgtttaaatgccgagaatgccacatgcaaggagcgtatggctcag
ttagtgtctggaaagcaagacgacgtggaaatgcaagacggcactgcgcttgcgcccgag
gtattgtctacaatcgaagccaaacagaaagaattggcgaaaaagcgcaaggaatttaaa
aagcaggaaggtcctcaacgggctgctttactcgctaatattatcgactggcacgtcgtc
tcaagccatacgttgcacgactcggacaagcctggcgtcacgtgcgtcgcgatcgatagc
aagcagccaacacgcgtggcaacggcaggcgtggacaagcacgccaaaatctttgacacg
gtcaagcagcaggtcgtcgcgacattgtcaggtcataccaagaagctaagccatgtctct
ttccacccgacggctgatgtactgcttacggcatcgcacgacaagacggttaagctatgg
acgttgcaaggagacaagagcagcgtagcttgcacgtttgagggctttcaagatgccgtc
acgagtgtgtcgatccacccaacgggcaattttgtcctgtcgggttcactagacgcaaca
tgggccatccacgacgcccgtcgcggtcagctcttaacacgccacacgctacacggcgag
ctagcgatgcctgcgatatctgctggccaacctacgaaatcgacgaacgagacgcgttgt
gcttgcttccatcctgatggtggcatctttggcacggccgccaagagcaagttggtgcaa
atgtgggccatgacgtcgctgtcaaatgtcgtgacgtttgaaggccacgcggcacccgtg
acggctttgagtttctccgagaatggctaccacttggcgtctggaagtgaggatggtgtc
gtgaagctgtgggatttgcgcaaagccgcgagctttggggaaatcgatttcaagaaagag
caccctacgcttcatgtaggagcgatttactcgatgaactttgacgccagtggctcgcat
cttgcagtggcgagcgctcagagtgtacaggtactcaaggaagtgcgcaagaatcagtgg
gaggtgatcaagtcattagaagaccacacggcgactgtcacgagtgtccagtttgctcct
gactcgagctacttggcctctacgtccatggaccggtctttaaagatctacagatag

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