Bremia lactucae (lettuce downy mildew): 94351071
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Entry
94351071 CDS
T10371
Symbol
CCR75_007339
Name
(RefSeq) uncharacterized protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
blac Bremia lactucae (lettuce downy mildew)
Pathway
blac03013
Nucleocytoplasmic transport
blac03015
mRNA surveillance pathway
blac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
blac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94351071 (CCR75_007339)
09122 Translation
03013 Nucleocytoplasmic transport
94351071 (CCR75_007339)
03015 mRNA surveillance pathway
94351071 (CCR75_007339)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blac03019
]
94351071 (CCR75_007339)
03041 Spliceosome [BR:
blac03041
]
94351071 (CCR75_007339)
Enzymes [BR:
blac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
94351071 (CCR75_007339)
Messenger RNA biogenesis [BR:
blac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
94351071 (CCR75_007339)
Spliceosome [BR:
blac03041
]
Complex C
Other components
EJC/TREX
94351071 (CCR75_007339)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
94351071 (CCR75_007339)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-GeneID:
94351071
NCBI-ProteinID:
XP_067814374
UniProt:
A0A976IA44
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MPGEENKEFDDELVDYEEEEDTTTDASKAAAEGKDAKKGHYVGIHSSGFRDFILKPECLR
AVVDCGFEHPSEVQHECIPQAVLGMDIICQAKSGMGKTAVFVLATLHQIEPVDGQISVVV
MCHTRELAFQIAHEYERFSKYLVDVKTGVFYGGVPISQNRDALKNNTPHILVGTPGRILG
LVREKTLKLDKVKHFVMDECDKMLEAIDMRRDIQEIFKATPHDKQVMMFSATLSKEIRPV
CRKFCQDPMEIYVDDETKLTLHGLQQYYIKLEESEKNRKLNDLLDALEFNQVVIFVSKKN
RGRELNRLLNECNFPSICITADLTQEERIKRYKSFKDFQKRILVTTDLFGRGMDIERVNI
VVNYDFPNDSDQYLHRVGRAGRFGTKGLSISFISSEEDTEMLAKVQSRFEVNIPELPDQI
DISTYMTT
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcgaggagaacaaagagtttgatgacgagctagttgactatgaagaggaagag
gatacaacgacggatgcctcgaaggccgctgctgagggcaaggacgcgaagaagggccac
tatgtcggcatccacagttctggcttccgtgacttcattctaaagcctgagtgtctgcgt
gccgtcgtggactgcggttttgagcacccttcggaagttcagcatgaatgcatcccccag
gccgttctcggcatggatattatttgccaggccaagtccggtatgggtaaaacagcagta
tttgtacttgctaccctgcaccagattgagcctgtagatggacagatcagcgtcgtggtc
atgtgtcacacccgtgagctagcgtttcaaatcgctcacgaatacgagcgatttagcaag
tacctggtggatgtcaagactggcgtattttatggtggtgtaccaatttcgcagaatcgc
gatgcactgaaaaacaacacgcctcacattcttgtgggtactcctggccgcatccttggc
ttggttcgcgagaaaaccctcaagttggacaaggtgaagcattttgtcatggacgagtgt
gataaaatgcttgaagccatcgatatgcgacgcgatatccaagagattttcaaggctacc
ccacatgacaagcaagtaatgatgttttctgcaaccttgagcaaagagattcgtccagtg
tgccgcaaattttgccaggacccaatggagatctatgtcgacgatgaaacgaaattaact
cttcacggtctacaacagtactacatcaaactagaggagtcggaaaaaaatcgaaaattg
aatgacttgctcgacgctctagagttcaaccaggtcgtgattttcgtgtcaaagaaaaac
cgaggacgcgagttgaatcgcctgctgaacgagtgcaactttccatcgatctgtataacg
gctgatcttactcaggaagagcgtatcaagagatacaaaagctttaaggattttcagaag
cgtatcttagtgactacggatttgtttggtcgaggcatggatattgaacgcgtcaatatt
gtcgtaaattacgattttccaaatgatagcgaccagtacctccaccgtgtcggccgtgcc
ggccgttttggtactaagggtctgtcgattagtttcatttcttcggaagaagatacggaa
atgcttgccaaagtgcagtcgcgtttcgaggtaaacattccggagttacccgaccagatt
gatatctccacgtacatgaccacgtag
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integrated database retrieval system
