KEGG   Bremia lactucae (lettuce downy mildew): 94352513
Entry
94352513          CDS       T10371                                 
Symbol
CCR75_008793
Name
(RefSeq) uncharacterized protein
  KO
K12880  THO complex subunit 3
Organism
blac  Bremia lactucae (lettuce downy mildew)
Pathway
blac03013  Nucleocytoplasmic transport
blac03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:blac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    94352513 (CCR75_008793)
  09122 Translation
   03013 Nucleocytoplasmic transport
    94352513 (CCR75_008793)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:blac03019]
    94352513 (CCR75_008793)
   03041 Spliceosome [BR:blac03041]
    94352513 (CCR75_008793)
Messenger RNA biogenesis [BR:blac03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     94352513 (CCR75_008793)
Spliceosome [BR:blac03041]
 Complex C
  Other components
   EJC/TREX
    94352513 (CCR75_008793)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    94352513 (CCR75_008793)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR3_1st WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta ANAPC4_WD40 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_WDR75_1st PAC11 Beta-prop_Aladin Cytochrom_D1 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st DSE1_N CFAP251_N Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_NOL10_N TRM82_WD WD40_like Beta-prop_IFT140_1st Tricorn_2nd Beta-prop_TEP1_C ASA1 Beta-prop_VPS8 eIF2A Beta-prop_DCAF12 Beta-prop_HPS5 YNCE Beta-prop_SPT8 Beta-prop_Nup120_160 NLP40
Other DBs
NCBI-GeneID: 94352513
NCBI-ProteinID: XP_067821772
UniProt: A0A976II70
LinkDB
Position
Unknown
AA seq 319 aa
MARVRSVTYVQLPELDGHSRKVYALGFNCNGTMLASGSNDRSIRIWDPVTERELMDLRGH
SDSVMSLAWDPTTPHHLASTGADKTVRFWDAKSGRIINSVSLPSDAINIAFSHDSKYVVV
GNLDCITLIDTCKARVVRRVVNPFESYEMQFSRNGYLFVAAGHAAGFGTFEIMRVIAEKK
GNANLESAHKVMAHAGSCLCLDLHPSGRYLALGGLDSLASIWDLDELFCVKTFVVTTASI
KSVRFSYEGRFLAIGMDDPLLVVVDVESGETVVKLQLQNSLQYLSWHPRKNLLAYVGDKA
SSEKNSNRGGVIKIIEMKE
NT seq 960 nt   +upstreamnt  +downstreamnt
atggcacgtgtcaggtcagtcacttacgtgcaacttccagaactcgacggccactcgcga
aaggtttacgcccttgggtttaattgcaatggcaccatgttggcctcagggtccaacgac
cgcagtatccgaatatgggaccctgtcacggagagagagctgatggacttgcgtggacac
tcggactcggtcatgtccttggcctgggaccccacaactccgcaccacttagccagcacg
ggtgccgacaaaaccgttcgcttctgggacgccaagagtgggcgcatcatcaatagcgtt
tcccttcccagtgatgcgatcaacatcgcttttagccacgactcaaaatacgttgtggta
ggaaatttagattgcatcacgctcatcgacacgtgcaaggcgcgcgtcgtacgtcgtgtg
gtgaatccgttcgagtcatacgagatgcaattcagcagaaatggctatttattcgttgca
gctggacacgcagccggatttggcacatttgagataatgcgagttattgcggaaaagaag
ggtaacgccaatctggagagcgcgcacaaggttatggcacatgcaggaagttgtctctgt
ctggacttgcacccatcaggaagataccttgctttggggggtctcgactcattggcgagc
atctgggacctagatgaactcttttgcgtgaaaacttttgtggtcacgacagcaagcatc
aagtctgtgcgcttcagttacgaaggaaggtttttagctatcggcatggacgatccttta
ctggtcgttgtggatgtagaaagcggcgaaacggttgtcaagttacaacttcaaaatagt
ttgcagtatttgagctggcatccaaggaaaaatctattggcctatgttggggataaggcc
tcgagtgaaaagaattctaatcgcggcggtgtcatcaaaataattgagatgaaggaatag

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