Bremia lactucae (lettuce downy mildew): 94353104
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Entry
94353104 CDS
T10371
Symbol
CCR75_009392
Name
(RefSeq) hypothetical protein
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
blac
Bremia lactucae (lettuce downy mildew)
Pathway
blac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
blac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94353104 (CCR75_009392)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
blac03041
]
94353104 (CCR75_009392)
Enzymes [BR:
blac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
94353104 (CCR75_009392)
Spliceosome [BR:
blac03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
94353104 (CCR75_009392)
Complex B
94353104 (CCR75_009392)
Complex C
U2 SnRNP specific factors
94353104 (CCR75_009392)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
94353104
NCBI-ProteinID:
XP_067816933
UniProt:
A0A976FIZ8
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All DBs
Position
LG4:complement(<6292283..>6294271)
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AA seq
606 aa
AA seq
DB search
MDQLQREYLRDARRKAPATDYFEAKDCAEEHTHILTPASGSGDDVDPLDAFMQDIDKQVK
QERKAPSKRVADKPPVLNLADEEEDASCYMGGFAQSTKKPRRGQNNDSEDSDEDVYTTAK
QFDTTDALDDRSSKVMEVLAPIDHSSIQYEPFRKNFYSIHRATSIRSTNDVATLQTKLRI
SVDGDNVPAPVQSFTHLNFDRKLLHTLTKLKLDTPTAIQAQTFPIALSGRDFIGIAKTGS
GKTLAFTLPMVRHVMDQRELQRGEGPIALVLVPTRELAHQTYMYVKKFLTSYGASCAAIY
GGAGKWEQVQTLKKGVEVIVATPGRLIEMIRKKVVKMTRVTFVVLDEADRMFEMGFEPQL
RSVMGQIRPDRQTLMFSATFRRPLQTLALEVLSNPIKVTIGQVGQANEDICQFAIVLPTH
GAKWPWLVAHMPQFVNDGRLLIFANSKNGCEELATNLRTAWPTAPARCLHGDKTQQERME
ALHKFKQGDCRVLVATDVAARGLDVKNIKTVVNYDVAKSIDTHVHRIGRTGRMGQDGVEM
GTAYTLVTQNESQFAAQLVANLHKSGQSVSMELLALAKRNNGHFQPSVAMNRIATPSDSA
SRQESL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggaccagttgcagcgcgagtatttacgtgacgcgcggcgtaaggctccggccactgac
tattttgaagcaaaagactgtgctgaagagcatacgcacattttaactccggctagcggc
agtggcgacgatgtggatccattggatgcttttatgcaagatatcgacaaacaggtgaaa
caagagcgcaaggcaccttcaaaacgagtggccgacaagcctcccgtgttaaatctggcg
gatgaggaggaggatgcaagttgctatatgggaggatttgcccagagtacgaaaaaacca
cgacgtggccaaaataacgacagcgaagattccgacgaggacgtgtataccacggccaag
caattcgacactacagatgctcttgacgacaggagctcaaaagtcatggaagtattggct
ccaattgaccattcgtcaattcaatacgaaccgtttcgaaaaaacttttattcgattcac
cgtgcgacaagcattcgtagcaccaatgacgtggcaacgcttcaaacgaaactgcgcatt
tccgttgatggagataatgtacccgctccagtccaatcatttacacacttgaatttcgat
cgaaaactgttgcatacccttacgaaactaaaacttgacacaccaacagccattcaagcg
caaacttttcccattgcgctttcgggacgggatttcattggaattgctaaaaccggatcg
ggcaaaacattggcatttacattgccaatggtgcgtcatgtgatggaccagcgcgagttg
caacgaggagaaggacccattgcgcttgtgcttgttccgacacgggaattggcgcatcaa
acgtacatgtatgtgaaaaagtttctcacgagctatggtgcttcgtgtgcggcgatttac
ggtggggctggcaagtgggaacaagtgcaaacattaaagaaaggagttgaggtcattgtg
gccactccaggacgattgattgaaatgattcgaaaaaaggtcgtgaaaatgacgcgtgtg
acgtttgtggtgctcgatgaagcagatcggatgtttgaaatgggttttgagccccaattg
cgttccgtaatgggtcaaatccgtcccgatcgacaaactcttatgttttctgcgacgttt
cgtcgacctcttcaaacattagcgcttgaggtgctttcaaatccgattaaagtgaccatt
ggccaagtgggtcaagcaaatgaagacatttgccaatttgccattgtgttgccaactcat
ggtgccaaatggccatggcttgtggcacacatgccacaatttgtgaatgatggtcgtttg
ctgatttttgcaaatagtaaaaatggatgcgaagaattggcaacaaatttaaggactgca
tggccaacggcccctgcccgttgtttgcatggagacaagacgcaacaagaacgaatggaa
gcattgcataaatttaagcaaggagattgtcgcgtgcttgttgcgacggacgtcgctgct
cgtggtctcgacgtaaaaaacattaaaacggtcgtcaattatgatgtagccaagagcatt
gatacgcatgtccatcgaattgggcgaactggacgaatgggtcaagatggtgtcgaaatg
ggtacagcctacactcttgtgacccaaaacgagtcccaatttgccgcccaattagtggct
aacttacacaaatccggtcaatccgtatcaatggaacttcttgctcttgccaaacgaaat
aatggccattttcaaccttctgttgccatgaatcgtattgcaacaccttccgactcggca
agtcgacaggaaagtctatag
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