Bremia lactucae (lettuce downy mildew): 94353297
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Entry
94353297 CDS
T10371
Symbol
CCR75_009587
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
blac Bremia lactucae (lettuce downy mildew)
Pathway
blac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
94353297 (CCR75_009587)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blac03019
]
94353297 (CCR75_009587)
Messenger RNA biogenesis [BR:
blac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
94353297 (CCR75_009587)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
94353297 (CCR75_009587)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
94353297
NCBI-ProteinID:
XP_067815285
UniProt:
A0A976FFG6
LinkDB
All DBs
Position
LG10:1368693..>1375988
Genome browser
AA seq
2366 aa
AA seq
DB search
MVSFASPLFWQINYLVTNLSKKNFKTSVAELNQLVELYGEDARIFLLNCLVQGVDFRDTR
GQKDALKIQLLTHEVAQASSRPNFTTFICEAIEGSSPYSSPISECHVTENFLNIFSKTLK
LSLPQQVTVGLAFAQGNNFERSAQAIQFLRAKIPEISLCDTKFPPDVLHSLVFVLRMKKE
FHDDVTEAELLLASVSSPHLTEMGSLEMAPLTIGNLQHVDCEPVTEPDMLSKLIADVSTS
CVFYELMEDVGYSCTASSQAFRTLLAEANLDNALTIPPVQVAGMLAMLSRTYSNLDAENG
ATLMANLTIDFDASTLDEAVVIPVRATWDFEVIADVLQKDFSAIKWAKVAEELDRDDLNI
QNVAQLRTLITAFQQFSQTKFCVTNLLRPWNNKRAQMNILKAAVEAPSEVLSFSESPHKL
APFEGADASAVPKNGVWFSLDIVETLLQLSEHDCYSDVRKLLDGAMKTCPDVLIANFAQA
SPCWNALRDDMFSELFSTYIMGRPNAPLIMRHLWSVAPKLVLYASVKCFYAATAPHIVSR
LFALFRNTGDSFASAIHSNYFSFALALATMGANHDVLNLESWLVERLASQRMAFATSCLA
FVHRNFARAVPKSTITPQSSHVLSIESLATILKCTMAVQGALPATIAQELKRIIKICMET
HPVISASTHPAGEVGNFLKTGIVGAAGAIGAIAAAGANVGAESDIASTDGNPSTYTAELI
EEQANAYFQQIYTSEQNINDVVAMLKRFQGSRDERERQIFFCMIHNLFDEYRFFPRYPEM
ELRITGVLFGKLIEHQVLPSNFLQTALRSVLESLREPINSKFFFFGACALQQFVPRLREL
PAYCTNLSQISHLQHALPEIMRQVNQVTRAIAVSGSSSVELSPDGNVALSLGDSLQSIST
AVSRDGVPKVISNAVSFGAKLPLPTNSITKALDDIEIQIPPSILSHSAGPSMTSTSPQAP
TISPPSPVTSKPVLSVDHIFHESSKMVENEKVEQPDENVKDRIHFIVNNMSISNLEVKIS
EMRKMLLPVFHGWLAKYLVVKRISTQPNYHTVYLIFIEKLMRPELEREILERTFQNARKL
LTSGTITTNSQQRSLLKNLGSWLGVFTLARNKPLLQRDLDLKELLYVGYETGHLIAVTPF
VAKILEGCKKSKIFKPPNPWVMGLIHAMSEIYDVPDLKLNLKFEIEVLFKLFKLNVEDQR
KTHLLHTRRPPPRTANPDFNVKIPKNLGIGQRSATPPPSSGIALARPFTPSKAKKPSNTF
APTGSPIENEGMPVHGLGASNNGSMVAESTVIPNLASYVAVNPDLPLRNVNLRRLVPLAV
DRAIREVISPVVERSVTIACITTREVILKDFATECDDTKMRKAAHLMVASMSGSLALITA
KEPLRNAIGIHLRALLPVAAGDAQQLEHVIQVCSNENTDLGCMLIEKASSEKAMRDIDEA
LANAYASRRRFQQQQTQSEKNSDRIHFFESSASSSVGAPCDQWPAALPEIFRLKSGGVPP
LLFVVYETFQRIPRPTSMPLSTRPNSGAYSVNSADKVGDVAGVSVAAALDRFAGLLERFE
LYVQKVVRQASTTQRELPSLLTTSAESEVFAVLREVRALGGSVRPAMRDEVCLKIANRIV
KFMYELGNGSRGNELFLEILVSSLEALTCCCDKLRKEIVGWVVRAPVDDKLKLHCGIIVA
LIRFKVVDARDFDIYLARNMERNSIAIEFAAHVVRQCVTMDHVSVAAQLSNTIEALARIV
ERHGVATTNKNVQILAALLEQARVQKVQNCLAPPAPSKNMGAIGSGSAAKTASERPLVQE
HAAFRHTVSNALEHWIAIYNDPIGNSKMHAQYLQMLKQYGLLADDESVSLFFKFGTELCV
DACLKSSVSASVTLKAGVKVSLNYAVLDALTHLMALLVKYLDPLPASKLQVLNHAVGAIA
NVLVATHDLSRKKKAPFDQRVFFRMFVNLMKELTAREPTLDSIHLPVLNTFASALNTLQP
AGLPGFVFAWTELISHRCFMPLLLRAKQQRGWQILHRLLMNLLTFMEPFLRCANLAAPLP
DSITALYNGVLRIILVLLHDYPDFLSDFYTSFCDVLPAACVQLRNVILSAFSRSIRVPDP
LTQGLQVSQLPEVSVAPRLMPTWGAALTHNGIKDYVDEFLHATANRASVFPADLISKLMR
PASLSERDLTACKYALPALNALILHLGKEGIANMTDGGLMPTSALPPLTRADSANSPTSK
FEQTAAMDLFRYLADELDAEGRYWYFSALANHLRYPNSHTHYFSCVILYLFSYSSNKLVK
EQITRVLIERLIANRPHPWGLLVTFIELIRNKSYKFWEQEYLVCSNEIKEVFDDVARTCL
ATASGASGASPLSALGGNAASSSASL
NT seq
7101 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcattcgcgtcaccactcttctggcagattaactacttagtaactaacttaagc
aagaaaaactttaagaccagcgtggctgagcttaaccagctagtagagctttacggcgaa
gatgcacgcatctttttgcttaattgccttgttcagggcgtcgacttccgagacacacgc
ggccagaaagacgcgctcaaaatccagctgctcacgcatgaggttgcacaagcctcttca
cgccctaactttacaacttttatctgcgaggcgattgaaggaagctcgccatattcttcg
cccattagcgaatgccacgtgactgaaaacttcttaaatatcttttctaaaacgcttaag
cttagccttccacagcaggtgacagtcggtttagctttcgcccagggcaataattttgaa
cgatctgcccaggccatccagtttctacgcgctaaaattcctgaaatttctttgtgcgat
acaaagtttcccccagatgtactacactcgcttgtgttcgtgttgcgcatgaagaaagag
tttcatgatgacgttactgaagccgaacttctccttgccagtgtctcctcaccccatctg
accgaaatggggtcacttgaaatggctccactaaccataggaaacctccaacacgtggac
tgcgagcctgtgacggagcctgatatgctgagcaagctaattgcagatgtttcgacaagc
tgtgtgttttatgaactgatggaggatgttggctattcgtgcacggcatcttcacaggca
ttcaggacccttctagcggaggcaaatttagacaatgcactcactatcccgccggtccaa
gttgcaggtatgttggcaatgctgtcgcggacatattctaatctggatgcggagaacggc
gctacactaatggcgaaccttacgattgacttcgatgcctccacgctggatgaggcagtc
gtcataccagtgcgtgctacatgggactttgaggttattgcagatgtgttgcagaaagac
tttagtgcaatcaaatgggcaaaagtggcggaggagttggaccgagatgacctcaacatc
caaaatgttgctcaattgcgtacactgatcacggcatttcagcaattttcacagaccaaa
ttctgtgtgacgaatttgttacggccatggaataataaacgtgcccaaatgaatatttta
aaggccgctgtagaagcgccttcggaagttttgtcattctcggaatcaccgcataagctc
gctccttttgaaggagccgatgcgtcagctgttcctaaaaatggcgtgtggttctcactt
gatatcgtggaaacattactgcagttgtcggagcacgattgctatagtgacgtgcgcaag
cttttagatggtgcgatgaaaacgtgtccagatgtgttgatcgccaattttgctcaggcg
tctccttgttggaatgcattgcgagatgacatgttctcggagctgtttagcacttatatc
atgggccggccaaacgcaccgctcataatgcgtcatttgtggtctgttgcgcctaagctg
gtgctatacgcaagtgttaaatgcttttacgccgccacagccccgcatatcgtatcgcga
ctgtttgcgctatttcgcaacactggcgactcgtttgcgtctgcaattcactctaattat
ttttcgtttgccttggcactagcgactatgggagccaatcacgacgtgctaaatttagaa
tcatggctagtggagcgtcttgcgtcgcaaaggatggcgtttgcgacatcgtgtctggca
tttgtgcaccgaaactttgctcgtgcggtgccaaagagcactataacccctcaatcgagt
catgtgctgtccattgagtcacttgcgacgatacttaaatgtaccatggctgttcagggg
gcgctacccgctaccatcgcacaagagcttaagcgcattattaaaatttgcatggagact
catcctgtcatctctgcatcgacgcacccggctggagaagtcggcaacttccttaagaca
gggatagtgggtgcagccggggcaattggcgccatagctgctgcaggtgcaaatgtcgga
gctgaaagcgatattgcctcgactgatggcaatccatcgacgtatactgctgaattgatc
gaggaacaggcaaacgcgtactttcagcaaatttatacatctgagcaaaatattaatgat
gtcgtggcaatgcttaagcggtttcaaggttctcgtgacgagcgtgaacggcagattttc
ttctgcatgattcacaatttatttgatgagtaccgattttttcctcgttatccagaaatg
gagctacgtataacgggagtacttttcggcaagcttattgaacatcaagtgcttccatct
aattttcttcaaaccgcgctgcgttctgtactggaaagtctccgggaacctattaattcc
aaattttttttctttggtgcatgcgcgcttcagcaatttgttccacgattgcgggaactt
ccagcgtattgtacgaatttatcgcaaatttctcacttgcagcacgctctgccggagatc
atgcgtcaagtaaaccaggttacacgtgcaattgccgtatcgggatcatcttcggtggaa
ttgagtcctgatggtaatgttgcgctgtcgctgggtgattcgctgcaatcgataagcact
gcggtctcaagagatggagtcccaaaagtaatcagcaatgctgtatcatttggcgccaag
ttaccactaccgaccaattcaattacaaaggctctagacgacatcgaaattcaaatcccg
ccatcaatcttaagtcactcagctggcccatcaatgacatctacgtctcctcaagcaccc
accatctctccaccatctcctgtaacctctaaaccagtgctaagcgtcgaccatattttt
catgaatccagcaaaatggtcgaaaatgaaaaggttgagcagcccgatgaaaatgtaaag
gatcgcatccacttcattgtgaataacatgtctatctcgaatttagaagtaaagatttcc
gaaatgcgaaaaatgcttcttcctgtttttcatggatggctcgcaaaatatttggttgtg
aagcgtatttcgactcagcccaattaccacacagtttacttaatttttattgaaaaactt
atgcgtccggagcttgagcgtgaaattttagagcgtacatttcagaatgcacgcaagcta
cttacctcgggtactattacgaccaattcccagcagcgctcattattaaaaaatctcggt
tcgtggcttggcgtgttcaccttggcgcgcaacaagcctcttctgcagcgtgacttggac
ttgaaggagcttctttacgtgggttacgagactggtcaccttattgccgtaacaccattc
gtcgctaaaattcttgaagggtgcaaaaagtcgaagatcttcaagccgccaaatccgtgg
gtcatgggcctcattcatgccatgagtgaaatctacgacgtgccagatttgaagctcaac
ttaaaatttgagattgaagtactgtttaagttgttcaagctgaatgtggaggaccagcgc
aagacgcatttgctgcatacccgacgtcccccccctcgcacggccaatccagattttaat
gttaaaattcccaagaatctgggaataggacaacggtctgcaacgccacccccaagctct
ggaatcgcgttggcacgaccatttactccaagcaaagcgaagaagccaagcaatactttc
gcacctaccggcagccccattgaaaatgaaggaatgccggttcatgggcttggagcaagc
aataatggatctatggtagctgagtcgacagtgattccgaatttggcatcatatgttgct
gtcaaccctgatttaccgttgcgaaatgtaaatttgcgccgtctcgttcctctggccgtg
gaccgtgcaattcgtgaggtaatatcgcctgtggtagaacgcagtgttacgatcgcatgc
atcaccactcgtgaagtgattttaaaagattttgctacggaatgtgacgataccaaaatg
cgtaaagcggctcacctgatggtagcgtcgatgtcgggatctctagctctcataactgca
aaggagccacttcgcaatgcaattggcattcatctgcgcgcattgcttccagtcgccgct
ggggacgcgcagcagcttgaacatgtgatccaagtctgctccaatgaaaatactgacctt
ggttgtatgttaattgaaaaggcgtcgtctgaaaaagccatgcgtgatattgatgaggct
ttggctaatgcgtatgcatcacgtcggcgctttcagcaacaacagacacaaagcgaaaaa
aattctgataggattcacttttttgagagcagcgcaagcagctcggttggtgctccctgc
gatcaatggcccgcagctttgcctgaaatctttaggcttaagtctggtggagtgccgcct
ttgctgtttgtagtttacgaaacctttcagcgcatccctcggcccacttccatgccgcta
tcaactcgtccaaattctggtgcatattcggtcaattctgccgataaggtaggagatgtt
gcgggtgtgagtgtggctgctgcattggatcgctttgctggattgcttgaacgtttcgag
ctctacgtacaaaaagtggttcgtcaagcatcaacgacccagcgcgagcttccatcgtta
ttgacaacctcggcagaaagtgaggtctttgctgttttgcgtgaggtacgtgcgcttgga
ggaagtgtacgaccagcaatgcgcgatgaagtttgtctaaagattgcaaatcgcatcgtt
aagtttatgtacgaattgggtaatggtagtcgaggcaatgagctgtttttggagattctg
gtgagctcattggaggcactaacatgttgttgtgataagcttcgcaaggagattgtggga
tgggtggtgcgagcacctgtggatgataagttgaagctgcattgtggaattattgtggca
cttattcgtttcaaggttgtcgatgcaagggattttgacatatacttggctcgtaatatg
gagcgcaatagcattgctatagaatttgcagctcatgttgttcgtcaatgcgtgacgatg
gatcacgttagtgtggctgcgcagctgtcaaacactatagaagctcttgcgcgcattgtc
gaacggcatggagttgcgacgacaaacaagaatgtccagatacttgctgcactcctagag
caggctcgtgtacaaaaggtgcagaattgcctagcgccaccagcaccgtcgaaaaatatg
ggtgcaattggtagtggtagtgcagcaaagaccgcaagcgagcggcctcttgtgcaagag
cacgctgcttttaggcatacagtgagcaatgcgctggagcactggattgcaatttataat
gatccaattggtaactcgaagatgcatgcacaataccttcaaatgttgaagcaatacgga
ttgctagctgacgatgaaagcgtgtcgctctttttcaaatttggtacagagctgtgtgta
gatgcctgcttgaagagctctgtttctgccagcgtcacgctgaaagccggcgttaaagtt
tcattaaattacgcagtcctagacgccctcacacatttgatggctctgcttgtgaagtac
cttgatcccttgcccgcttcaaaattgcaggtcctgaaccatgctgtgggggcaattgcg
aatgtattggttgccactcacgacttgtctcgcaaaaaaaaagcgccatttgaccagcgc
gttttttttcggatgtttgtaaatctaatgaaggagttgacagctcgagaaccgacttta
gattcgattcaccttccggttcttaacacttttgctagcgcacttaatacgctacagccc
gcagggttgcctggttttgtatttgcctggacagagcttatttcgcaccgttgcttcatg
ccactgctgctgcgtgcgaagcagcagcgtggttggcagattttgcaccgtctgcttatg
aatcttctcacattcatggagccattcttgcgctgtgcgaacttagctgcacctctacca
gactccatcactgcactctataatggcgtgttgcgcatcatactggtgctccttcacgac
tacccggattttttaagcgacttttatacgagtttttgcgacgtgttgcctgcagcttgt
gtccagctacgtaacgtgatcttgtcggctttctcacgttcgatacgcgtgcctgatccg
ctcacacaggggctacaagtctcccaactccctgaagtaagcgtggccccgcggctgatg
cctacttggggagcggctcttacgcacaacggtatcaaggactatgtcgatgagttcctg
catgcaacagcgaatcgcgcctcggtgtttcctgccgatctcatttctaagctgatgcgc
cctgcgtctctttcagagcgcgatttaacggcttgcaagtatgcactgcctgctttaaat
gcattaatattgcatctcggcaaggagggcattgccaacatgaccgatggtggcttaatg
cctacgagtgcactaccaccgctgactcgagccgacagcgcaaatagtccaactagcaag
tttgagcagaccgcagctatggatttgtttcgctacttggcggacgagctggacgcagaa
ggccgctattggtacttcagcgcgctggcgaaccacctacgttacccaaatagccacacg
cattatttcagctgcgtcattctttacttgttttcgtactcgagcaacaaactggttaag
gagcagataacccgcgtgcttattgagcgtctcatagcaaatcgcccacatccatggggt
ctcttggtgacatttattgagctcattcgcaacaaaagttacaagttttgggagcaggag
tatcttgtgtgctcgaacgaaattaaggaggtgtttgacgatgtagcgcgcacgtgtcta
gcaacagcgtccggtgcttcgggcgctagccctttaagcgcactaggtggaaatgcagca
tcttccagtgcgtccctgtaa
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integrated database retrieval system
