Blattabacterium sp. DPU: G9C01_01205
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Entry
G9C01_01205 CDS
T10481
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
blad Blattabacterium sp. DPU
Pathway
blad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G9C01_01205 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blad03021
]
G9C01_01205 (rpoC)
03400 DNA repair and recombination proteins [BR:
blad03400
]
G9C01_01205 (rpoC)
Enzymes [BR:
blad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G9C01_01205 (rpoC)
Transcription machinery [BR:
blad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G9C01_01205 (rpoC)
DNA repair and recombination proteins [BR:
blad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G9C01_01205 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QIK16570
LinkDB
All DBs
Position
253230..257459
Genome browser
AA seq
1409 aa
AA seq
DB search
MNRKRNNKFNKIIIRLASPEVILKESHGEVLKPETINYRTHKPERDGLFCERIFGPVKDY
ECACGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHISLVVPIVHIWCFRSSPNKIGYLL
GLSSKKLEMIIYYERYVVIQGGLGLRSDGSIFNKGDFLTEEEYLQVLNKLPKGNQQLEDS
DPNKFIAKMGAECIEDLLNRVDLDLLSMELRNQANNETSKQRRTEALKRLQIVESFREGK
KNGGNPSWMIIHVLAVIPPELRPLVPLDGGRYAASDMTDLYRRVLIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKVSAVKSEGNRPLKSLSDALKGKQGRFRQNLLGKRVD
YSARSVIVVGPHLKLHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSSKKIIDKRDPMI
WDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCAAFNADFDGDQMAV
HLPLSHGAILEAQLLMLASQNILNPANGSPITVPSQDMVLGLYYMTKPLVSDSERKVKGE
GLIFYSPEEVEIAYNQNVVDLHALIKVKVFIREEEKFISKIIETTVGRVLFNQVVPKKVG
FINESLTKKSLREIIGKILHITDVPTTANFLDDIKELGFYNAFKGGLSFGLGDIIIPDNK
KKMVFHAIKQVDNVKMNYNMGLITNNERYNQVIDIWTNTNAMLTEKVMKYMREDRNGFNP
VYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSSGGEIIENPILSNFREGLSILEYFIS
THGARKGLADTALKTADAGYLTRRLVDAAQDVIIKIDDCKTLRGLEISALKKNEEVVETL
FDRILGRISLNDIYKKNELIISSGEMINEKIAEIIDKSGIEIVEVRSPLTCEAKMGICSK
CYGRNLSTGKIAQKGEAVGVLAAQSIGEPGTQLTLRTFHVGGTAGNITESSQIKAKYEGI
IEFEDLKLVETKQNSNQIGIVVSRTTEMKLFNLKKSSVLMANNIPYGACLYVKHGAQLKI
GDTICKWDLYNAVIVAEFSGTISYQHLEKGVTYQVEIDEQTGFQEKVITEVRNKNLIPTL
KILNEKNEELKVYNLPVGAHLMVENEEKIDIGKILVKVPRKTAKSGDITGGLPRLSELFE
ARNPSNPAVVSEMDGIVSHGKIKRGNREIIVESKTGEIRKYLVKLSNQILVQENDYVKAG
MPLSDGAITPNDILNIRGPRAVQEYLVKEIQEVYRLQGVKINDKHFEVIVLQMMRKVEVI
DVGDSKFLEGNIEYKDDFIEENDRISQMRVVEDSGDSETFKNGDIISYRDLINENTVIKY
KNKKLIKTRNAIPATARPILQGITRAALQTKSFISAASFQETTKVLSEAAISSKIDHLHG
LKENVIVGHKIPAGTGLREYESIFTDISQ
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaatagaaaaagaaacaataaatttaataaaataattattcgattagcttctccagaa
gttatattgaaagaatcacatggagaagtattaaaaccggaaacaattaattaccgtact
cataaaccagaaagagatggtcttttttgtgaacgaatttttggtccagtaaaagattat
gaatgtgcttgtggaaaatataaaagaattcgttataaagggattatttgtgatcgatgt
ggagttgaagttaccgaaaaaaaagtaagaagagaacgtatgggacatataagtcttgta
gttcctattgttcatatttggtgttttcgatcatctcctaataaaattggatatttatta
ggcttatcttctaaaaaacttgaaatgattatttattatgaacgatatgttgtgattcaa
ggaggattaggtttacgttcggatggatctatttttaataaaggagattttcttactgaa
gaagaatatttacaagttttaaacaaactcccaaaaggaaatcaacaattagaagattcc
gatcccaataaatttattgctaaaatgggagcagaatgtatagaagatcttttaaataga
gtagatttggatcttttatcaatggaattaagaaatcaagctaataatgaaacttctaaa
caaagacgtacagaagcattaaaacgtttacagattgttgaatcttttagagaaggaaaa
aaaaatggaggaaatccatcttggatgattattcatgtattagcagtgattcctcctgaa
ttacgtcctttagttcctttagatggaggaagatatgctgcttctgatatgactgattta
tatcgtcgtgtacttataagaaataatcgtttgaaaagacttatagaaatcaaagctcct
gaagtcattttacgaaatgaaaaaagaatgcttcaagaagctgttgattctctttttgat
aattcaagaaaagtttctgctgtaaaatcagaaggaaatcgtcctttaaaatctttatct
gatgcattaaaagggaaacaaggtcgttttagacagaatcttcttggaaaaagagtagat
tattcagcgcgatctgttattgtagtaggcccccatttgaaattacatgagtgcggattg
cctaaagatatggccgcagaactttataaaccttttattatcagaaagttaattgaaaga
ggaatagtaaaaacagtaaagtcttccaaaaaaattattgataaaagagatcccatgata
tgggatattttagaaaatgttttaaaaggacatcctgttttattgaatcgagctcctaca
ttacatagattaggaattcaagcttttcaacctaaattgatagaaggaaaagctattcaa
ttacatcctttagtttgtgctgctttcaatgcagattttgatggagatcaaatggctgtt
catttacctttatctcatggagccatattagaagctcaacttctgatgttagcttctcaa
aatatattaaatcctgcaaatgggtctcctattacagtcccttctcaagatatggtatta
ggactatattatatgactaaacctttagtatcagattctgaaagaaaagtgaagggagaa
ggacttattttttattctccagaagaagttgaaatagcatataatcaaaatgtagtagat
ttacatgctttgattaaagttaaagtttttatccgtgaagaagaaaaatttatatccaaa
ataatagaaacaactgtaggaagagttttatttaatcaagtagtacccaaaaaagtagga
ttcattaatgaatctcttacaaaaaagtctttgagagaaattataggtaaaatattacat
attacagatgttcctactactgctaactttttagatgatattaaagaattaggtttctat
aatgcatttaaagggggattatcttttgggttgggagacattattattcctgacaataaa
aaaaagatggtttttcatgctattaaacaagtagataatgtaaaaatgaattataatatg
ggattgatcacgaataatgaacgatataaccaagtaattgatatatggacaaatactaat
gctatgcttactgaaaaagtaatgaaatatatgcgtgaagatagaaatggatttaatccc
gtatatatgatgttagattctggagcaagaggttctaaagaacaaatacgtcaactttca
ggaatgcgtggtttaatggctaaacctcaaaaagcaggatcttctggaggagaaattatt
gaaaatcctattttatctaattttagagaaggtctttctattttagaatattttatatct
actcatggagctagaaaaggattagctgatactgcattaaaaactgcagatgcgggatat
ctcacaagacgtttagttgatgcagctcaagatgttatcattaaaatagatgattgtaaa
actttacgaggattagaaatttctgcattaaaaaaaaatgaagaggttgtagaaacttta
tttgatagaattttagggcgtatatctttaaatgatatttataaaaaaaatgaattgata
atttcttcaggagagatgattaatgaaaaaattgcagaaataattgataaatctggaatt
gaaatagtagaagttagatctcctttgacttgtgaagcaaaaatgggaatttgttctaaa
tgttatggtcgtaatttatctacaggaaaaatagctcaaaaaggagaagcagttggagtt
cttgcggcacaatcaattggagaaccaggaacacaattgactttacgaacttttcatgtt
ggaggaacagcaggaaatattacggaatcttcacaaataaaagcaaaatatgaaggaatc
atagaattcgaagatttaaaattggtggaaacaaaacaaaattctaatcaaataggaata
gtagtttctcgaactacggaaatgaaactattcaatttaaaaaagtcatctgttttaatg
gcaaataatattccttatggtgcttgtttgtatgtgaaacatggagctcaattaaaaata
ggagacacaatttgcaaatgggatttgtataatgcagttattgttgcagaattttctgga
acaatatcttaccaacatttagagaaaggagtaacatatcaagtagaaatagatgaacaa
actggatttcaagaaaaagttataacggaagtaagaaataaaaatttgatcccaacatta
aaaattcttaatgaaaaaaacgaggaactaaaagtgtataatcttccagttggagctcat
ttaatggtagaaaatgaagaaaaaatagatataggaaaaatattagtaaaggttccaaga
aaaacagctaaatcaggagatatcacaggagggttacctcgtttatctgaattatttgaa
gcacgtaatccatctaatccagctgtagtatcagaaatggatggaatagttagtcatgga
aaaataaaaagaggaaatagagaaatcattgtagaatctaaaacaggagaaattagaaaa
tatttagtaaaattatctaatcaaatacttgtacaggaaaatgattatgtaaaagcagga
atgccattatcagatggagcaatcacccctaatgatattttaaatataagaggccctaga
gctgttcaagaatatttagtgaaagaaatacaagaagtgtatcgtttgcaaggtgtaaaa
attaatgataaacattttgaggttattgttttacaaatgatgagaaaagtagaagtaata
gatgtaggagatagcaaatttttagaagggaatatagaatataaagatgattttatagaa
gaaaatgatagaatttctcaaatgagagtagtagaagattccggagattctgaaacattt
aaaaatggagatattattagttacagagatttaataaatgaaaatacagttataaaatat
aaaaataaaaaattaatcaaaactagaaatgcaattcctgctacggcaaggcctatttta
caaggaatcacaagagctgcattacaaaccaaatcttttatttctgcagcttcatttcaa
gaaacaacaaaagttttgagtgaagcagctataagtagcaaaattgatcatttacatgga
ttaaaggaaaatgttattgtaggacataaaattcccgccggaactggattgagagaatat
gaatccatttttacagatatttcgcaatga
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