Borreliella lanei: QIA23_02425
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Entry
QIA23_02425 CDS
T09320
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
blan
Borreliella lanei
Pathway
blan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QIA23_02425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blan03021
]
QIA23_02425 (rpoC)
03400 DNA repair and recombination proteins [BR:
blan03400
]
QIA23_02425 (rpoC)
Enzymes [BR:
blan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QIA23_02425 (rpoC)
Transcription machinery [BR:
blan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QIA23_02425 (rpoC)
DNA repair and recombination proteins [BR:
blan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QIA23_02425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WKC86220
LinkDB
All DBs
Position
complement(397265..401398)
Genome browser
AA seq
1377 aa
AA seq
DB search
MKEIKDFERIKIKIASPDQIRNWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSVRYKGIICDRCNVEVTHFKVRRERMGHIELAAPVAHIWYYKYIPSRIGLLLDI
TASSLNSILYYEKYVVIEPGDTDLKKMQLLNEDEYIEARERYGMSFNASMGAEAIKTLLE
NLDLDELSSKLRIQMIDKDDKTDKKLLRRLEIIENFKISGNKPEWMIMEVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGSSSRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPAK
MALELFKPFVIRRLIESEAVFNIKRAKNLIEQEVDEVWQILDLVIKEHPILLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPAAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMEKKNVVGEGKKFLNFSNVILAINNRSLDYNASIYVK
IDGEYKKTTAGRVIFNEALPKGIEFVNKTLSDLELQILISKVYVVHGSSTVIEMLDIIKE
LGFRYATKFGCTISMSDIIVPDEKRTYVERANKEIAKIQNDYAKGVITGEERYNNVVSVW
LKTNEELTNKMMEILKRDRDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVETVKNGEEILESLKEKAVGSYSIERIKNPITGEIVLDANEEISEAKIELLEKIGI
EKLVIRSVLTCEAEHGVCQKCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKISLKNAFILNSIEGFNVRVDNGILFTRKGTLKIINVFYEEKIKNIKEI
KVLDSQRVIKGIPLFVDKKGVEILSSYIGYVKLRDDNFFIVSEEQEVALKAGTKLEIEVG
DYVESGKVIGTFDPFAEPIIAEVEGKIKFKDIILGTTLKEEINTETGNVEKRITDNVFES
LDPRIFIIDSSGMEVASYVLPGDAYLQVEDGQNINIGDVIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGIVQFKSIQKGKRLINILDEYGVEHKHYIPAGKHLLVRDGD
VVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVAVGDTNFVYGQKVDKHTFYEQNRKVIEQGGEPAIASPILIGVTKTSLNIDSFISA
ASFQETTKVLTDASIAGKIDDLRGLKENVVIGHLIPTGTGMGLYKKIKVSENIDSEV
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagataaaagattttgaaagaataaaaattaaaatagcatctcctgaccaaatt
agaaattggtcttatggggaggttaaaaagtccgagactattaattatagaactttaaga
cccgaaaaggatgggcttttttgtgaaaggatttttggtactacaaaggaatgggaatgt
tattgcggtaaatttaaatcggttagatataaaggtattatttgtgatcgttgtaatgta
gaggttactcattttaaggttagacgtgaaagaatgggtcatattgagctagcagctcca
gttgcccatatttggtattacaaatatataccctctaggattgggcttttgcttgatatt
acggcatctagtttaaattctattctttattatgaaaaatatgtggtaattgagccgggc
gatactgatcttaaaaaaatgcagcttttaaatgaagatgagtacatagaggctagagag
cgatatggcatgtcttttaatgcttcaatgggagctgaagctattaaaactcttcttgaa
aatcttgatcttgatgagctttcatctaagcttaggattcaaatgatagataaagatgat
aaaactgataagaagctcttaagacgtcttgaaattattgagaattttaaaatttctggc
aataagccagaatggatgattatggaggttcttcctgttattcctccagagattaggcca
atggttcagcttgatggagggcgttttgcaacatctgatcttaatgatctttacagaaga
gttataaatagaaataatcgtttaagaaaattgcttcttcttaatgcgccagagattatt
gtgagaaacgaaaaaagaatgcttcaagaatcagtagactctctttttgacaattctcat
aaaagaaaggttgtcaaaggctcatctagtaggcctctaaagtcgctttccgatgcatta
aaaggtaagcagggaaggtttagacaaaatcttcttggtaaaagagtagattattctggt
cgttctgttattgttgttggacctgagctgaagctacatcaatgtggattgcctgcaaag
atggcccttgagctttttaagccttttgtgataaggaggctgattgaaagtgaagctgtt
tttaatatcaaaagagcaaagaatttaatagagcaagaagttgacgaggtgtggcaaatt
ttagatcttgttattaaagagcatcccattcttttaaatagggcgcccactcttcataga
cttgggattcaagcttttgaacctgtgttagttgagggtaaagcaataaaattacatccc
cttgtttgtcatgcatataatgccgattttgatggcgatcaaatggcagtacatgttcct
cttactccagcagcacaagctgaaagttgggctttaatgctttcaacaaataatctttta
aatcctgccaatgggcaccctattgtttttccatcccaagatattgttttgggcctatat
tatttaactatggaaaaaaagaatgttgttggagaaggtaaaaagtttttaaactttagc
aatgttattcttgccataaataataggagtctagattacaatgcttctatttatgtaaaa
attgatggcgaatacaaaaaaaccacagctggtagggttatatttaatgaggctttgccc
aagggaattgaatttgtaaataaaactcttagtgatttggagctacaaattttaatatca
aaagtttatgtagttcatggttcttctaccgtaattgaaatgcttgacatcatcaaggag
cttggctttaggtatgccactaagtttgggtgcacaattagcatgagcgatattattgtt
cctgatgaaaaaagaacttatgtagaaagggctaataaagaaattgctaaaattcaaaat
gattatgccaaaggtgttattactggtgaagaacgatataataatgtagtttctgtttgg
ttaaagaccaatgaagagcttactaataagatgatggaaattctaaagagagatagagat
ggatttaatgttatatacatgatggcagattctggtgctaggggcagtagaaatcaaata
agacaacttgctggcatgaggggattaatggcaaaaacttctggggatattattgagctt
ccaattatttctaactttaaagaaggtctttctgtgatagagttttttatatctacaaat
ggagcaagaaagggtctagcagatactgctcttaagaccgccgatgctggatatttaact
cgaagattggtagacattgctcaagatgttgttgttagaatagaagattgtggaactata
aacggaataaaagttgagactgtaaaaaatggagaagaaatattagaatctttgaaagaa
aaagctgttgggagttattctattgaaagaataaaaaatccaattactggcgagattgtt
ttagatgcaaatgaagaaatctcagaagctaaaatagagttattagagaaaattggtatt
gaaaaacttgtgattaggtctgttttaacatgtgaggctgagcacggtgtttgtcaaaaa
tgttatggtagagatttttctaagaacaaacctgttaacattggtgaggctgtaggaata
attgctgctcaatccataggtcaaccgggtactcaattaaccatgagaacttttcatatt
ggtggagttgctcaggctggtagtgaggatgataaaatatccttaaagaatgcctttata
cttaatagcatagaaggttttaatgttagagtcgacaatggaattcttttcacaagaaaa
ggaactttaaaaataatcaatgttttttatgaggaaaaaattaagaatataaaagagatt
aaagttttagattctcaaagagtaataaaaggaattcctttatttgttgataaaaagggt
gtagagattctctcttcttatattggttatgttaaattaagagacgataattttttcata
gtatcagaagagcaagaagttgctttgaaagctggaacaaagcttgaaatagaggttggt
gattatgttgaatcgggcaaagttattggtacatttgatccatttgcagagcctattatt
gcagaagttgagggtaaaattaaatttaaagatattattttaggaaccactcttaaagag
gagataaatactgaaacaggcaatgttgaaaaaagaattacagataatgtttttgaatct
cttgatcccagaatttttattattgatagtagtggtatggaggttgcatcttatgtattg
ccaggtgatgcttatcttcaagttgaagatggtcagaatattaacataggagatgttatt
gcgaaactttctaaaggttctgaaaaaactcaagatattacaggtggattgcctcgtgtt
aatgatctttttgaaacaagaattcctaagaatttaactgaaatggctaaagtaagtgga
attgtgcaatttaaatcaattcaaaaaggtaaaagacttattaatattttagatgagtat
ggggttgaacataaacattatattccagccggaaaacatcttttagttagagatggagat
gttgttaaagcaggagatatgctttgtgatggtagaattaatcctcatgatgtgcttgaa
attttaggtgggattagtttacaagaatttttattggcagaaattcaggatgtttatcga
aaacagggtgttagcattaatgataaacatattggtgtgataatcaagcaaatgatgaaa
aaagttaaaattgttgcagttggtgatactaattttgtttatggacaaaaggtagataag
cacactttttatgagcaaaatagaaaagtaatagaacaaggtggtgagccagcaatagca
agtccaattcttataggagtgactaagacgtctcttaatatagattcttttatttctgca
gcttctttccaggaaacaacaaaagtattaacagatgcttcaattgctggaaaaatagat
gatcttagaggattgaaagaaaatgttgtaattggacatttaattcctactggaactggt
atggggctttataaaaaaattaaagttagtgaaaatatcgattctgaagtttaa
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