Blastococcus sp. PRF04-17: MVA48_00575
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Entry
MVA48_00575 CDS
T08406
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
blap
Blastococcus sp. PRF04-17
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
blap03016
]
MVA48_00575
Enzymes [BR:
blap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MVA48_00575
Transfer RNA biogenesis [BR:
blap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MVA48_00575
Prokaryotic type
tRNA splicing ligases
MVA48_00575
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UOY01914
LinkDB
All DBs
Position
complement(113208..114371)
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AA seq
387 aa
AA seq
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MEKINERLLNWASILEDTTREQAERTASMPFIWPHLALMPDAHLGKGATVGSVIPTDGAI
IPAAVGVDIGCGMIAVRTQFTADDLAGRDLAVLHGQISRSIPLSAGNRNQKIRASAEPRI
AELRDMPGVGQADAEARQWPQQLGSLGSGNHFIEVSLDETDRVWLFLHSGSRGVGNKLAQ
KHIRIAQEQCRRRHIQLPDRDLAYLVEGEPEFDRYIEALRWAQRFAYLNREEMMDRCVDQ
LGRFLGTEVERHDTVNCHHNYTERETHFGREVWLSRKGAISARAGQLGLIPGSMGAASYV
VVGKGNVPSLMSSPHGAGRNHSRAAARRLFTRSDLDARMTGIAWGHSDAFLDEHPDAYKP
IDQVMADAADLVEVRHTLRQIVNVKGD
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcaacgaacgcctgctcaactgggcgtcgatcctggaggacaccacccgg
gagcaggccgagcgcaccgcctcgatgccgttcatctggccgcacctggcgctgatgccc
gacgcccacctcggcaagggcgcgaccgtcgggtcggtcatcccgaccgacggggcgatc
atcccggcggcagtgggcgtcgacatcggctgcggcatgatcgccgtccgcacccagttc
acggccgacgacctggccgggcgggacctggcggtgctgcacgggcagatctcccggtcg
atcccgctgtcggccggcaaccggaatcagaagatccgggcgagcgcggagccgcggatc
gccgagctgcgcgacatgcccggcgtagggcaggcggacgcggaggcgcggcagtggccg
cagcagctgggctcgctcggctcgggcaaccacttcatcgaggtgtcgctcgacgagacc
gaccgggtctggctgttcctgcactccggctctcgcggtgtcggcaacaagctcgcgcag
aagcacatccggatcgcgcaggagcagtgccggcgccggcacatccagctccccgaccgc
gacctcgcctacctggtcgagggcgagccggagttcgaccgctacatcgaggcgctgcgc
tgggctcagcggttcgcctacctcaaccgcgaggagatgatggaccgctgcgtcgaccag
ctcggccggttcctcggcaccgaggtggagcggcacgacacggtcaactgtcaccacaac
tacaccgagcgggagacgcacttcggccgtgaggtgtggctgtcgcggaagggcgcgatc
tcggcgcgggcgggccagctcggcctgatcccggggtcgatgggcgcggcgtcgtacgtg
gtggtcggcaagggcaacgtgccgtcgctgatgtcctcgccgcacggcgcgggccgcaac
cactcgcgcgcggcggcgcggcggctgttcacccggtcagacctggacgcccggatgacg
ggcatcgcgtgggggcactccgacgcgttcctcgacgagcaccccgacgcgtacaagccg
atcgaccaggtgatggccgacgccgccgacctggtcgaggtgcggcacacgctgcgccag
atcgtcaacgtcaagggcgactga
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