Blastococcus sp. PRF04-17: MVA48_08335
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Entry
MVA48_08335 CDS
T08406
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
blap
Blastococcus sp. PRF04-17
Pathway
blap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MVA48_08335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blap03019
]
MVA48_08335
03009 Ribosome biogenesis [BR:
blap03009
]
MVA48_08335
Enzymes [BR:
blap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MVA48_08335
Messenger RNA biogenesis [BR:
blap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MVA48_08335
Ribosome biogenesis [BR:
blap03009
]
Prokaryotic type
rRNA processing factors
MVA48_08335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
UOY03332
LinkDB
All DBs
Position
complement(1641632..1644487)
Genome browser
AA seq
951 aa
AA seq
DB search
MADTDSTTNDTTDETTEEDTGTAVTEVPAVSEDSSVPNDAEAAEPAEDEPEPEQEPEQEP
EPELPRFAAPFSSPEPTAVVARPRRRATRTVIAADPDSVDAPAPAPAVPAFISFVAPSEP
DAPPAPRRRSRRAAASAEDVETDEPTAETDDADEPAPRSRRSRSRRRPVETPDVEDVDEL
TDEEAEDAEDSDDTEDRDEGTTGSRRRRRGRRGRGRGRTGDDSSEDSDADDTEDSDSDDD
ETTADADADSDADSDDAEGGSSTRRRRRRRRRGGSSGGEGSADDVDDDDRPERAGRNGRT
TSDDDVRGVTGSTRLEAKRQRRRDGRDTGRRRAPILTEAEFLARREAVDRKMVIRQKGER
TQIAVLEDDVLVEHYVTQASATSFAGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV
NWDAAGLSGKQRSIETALKSGDKVLVQVTKDPIGHKGARLTQQINLPGRFLVFVPGGSMT
GISRKLPDTERQRLKDILKKIVPEDAGVIIRTAAEGASEEELTRDVNRLTAQWDVIQKKA
ESTSNAPTLLYGEPDLAIRVIRDVFNEDFKELVVQGDDAWDTVEAYVAHVSPELSGRLTR
FTGEGDAFRDLRIDEQLAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEQ
TVTRNNMEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRTKHQVA
EVTSLGLVQMTRKRVGQGLLEVFSEPCEHCRGRGIIVSTDPVDEKRRGGNGGGNGGGSGG
GGTGSGRRDRSSGSRDAKDKDGGRDGGKDAVDAAPEQPDVPTETDGDAAEGGRSSGRRNR
GRRNRGQAGEERAAEDAAVLTAAEPVVEETAETPESAETTAEESVAAVPAPVGAAPVEPV
PVSPAVTTVEPVVEEAPEPAAEPAVASDEAPATGRPRRRRAASRPAGPPVS
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacaccgacagcaccaccaacgacaccaccgacgagacgacggaggaggacacc
gggaccgcggtcaccgaggtccccgcggtctccgaggactcctccgtgccgaacgacgcc
gaagcggccgagccggccgaggacgagccggagccggagcaggagccggagcaggagccg
gagccggagctgccgcggttcgccgcgccgttcagctccccggagccgacggccgtcgtc
gcccgtccccgccgccgtgccacccgcacggtcatcgccgccgaccccgactcggtggac
gcgcccgcgcccgcaccggcggtcccggcgttcatcagcttcgtcgcgccgtcggagccc
gacgccccgccggcgccgcggcgccgcagccgccgcgccgcggcgtccgccgaggacgtc
gagacggacgaaccgaccgccgagaccgacgacgccgacgagccggcaccgcgctcccgc
cgcagccgctcgcgccgccgcccggtggagacgccggacgtcgaggacgtcgacgagctg
accgacgaggaggccgaggacgccgaggactccgacgacaccgaggaccgcgacgagggc
accaccggcagccgacgccggcgccgcggccgccgcggccggggtcgggggcgcaccggc
gacgacagctccgaggactcggacgccgacgacaccgaggactccgactccgacgacgac
gagaccaccgccgacgccgacgccgactcggatgccgactccgacgacgccgagggcggc
tccagcacccgccgccggcgccgccgtcgtcgtcgcggcggcagcagcggtggcgagggc
tcggccgacgacgtcgacgacgacgaccgccccgagcgggccggccgcaacggacgcacg
accagcgacgacgacgtccgcggggtcaccgggtccacccgcctcgaggccaagcggcag
cgccgccgcgacggacgggacaccggtcgtcgtcgggcgccgatcctcaccgaggccgag
ttcctggcccggcgcgaggccgtcgaccgcaagatggtcatccggcagaagggcgagcgc
acgcagatcgccgtcctcgaggacgacgtgctcgtggagcactacgtgacccaggcgtcg
gcgacgtccttcgcgggcaacgtctacctcggccgggtgcagaacgtgctgcccagcatg
gaggcggcgttcgtcgacatcggcaaggggcgcaacgccgtcctctacgccggtgaggtc
aactgggacgccgccggtctgtcgggcaagcagcggtccatcgagaccgcgctgaagtcc
ggcgacaaggtgctggtgcaggtcaccaaggacccgatcggccacaagggcgcgcggctg
acccagcagatcaacctgcccggccgcttcctggtgttcgtgcccggcggctcgatgacc
ggcatcagccgcaagctgcccgacaccgagcggcagcggctcaaggacatcctgaagaag
atcgtgcccgaggacgccggtgtgatcatccggaccgcggccgagggggcttccgaggag
gagctcacccgcgacgtcaaccggctgaccgcgcagtgggacgtgatccagaagaaggcg
gagtcgaccagcaacgcgccgacactgctctacggcgagccggatctggcgatccgggtc
atccgcgacgtcttcaacgaggacttcaaggagctcgtggtgcagggcgacgacgcctgg
gacaccgtcgaggcctacgtcgcgcacgtctccccggagctgagcgggcgtcttacccgg
ttcaccggtgagggcgacgccttccgcgacctgcgcatcgacgagcagctggccaaggcg
ctggaccgcaaggtgtggctgccctcgggcggctcgctggtcatcgaccgcaccgaggcc
atgaccgtcgtggacgtcaacaccggcaagttcgtcggctcgggcggcaacctggagcag
acggtcacgcgcaacaacatggaggcggcggaggagatcgtccgccagctccggctgcgg
gacatcggcggcatcatcgtcatcgacttcatcgacatggtgctcgagagcaaccgcgat
ctcgtgctgcggcggctcaccgagtgcctgggccgcgaccgcaccaagcaccaggtcgcc
gaggtcacctcgctgggcctggtccagatgacccgcaagcgggtgggccagggtctgctg
gaggtcttctcggagccctgcgagcactgccgcgggcgggggatcatcgtcagcaccgac
ccggtcgacgagaagcgccgcggaggcaacggcggaggcaacggcggaggcagcggcggt
ggcgggaccggcagcggccgccgcgaccggtccagcgggtcccgtgacgccaaggacaag
gacggcggcagggacggcggcaaggacgccgtcgacgcggcgccggagcagcccgacgtg
cccaccgagaccgacggcgacgcagcagagggcggccgtagtagcggtcggcgcaaccgc
ggccggcgcaaccgcggacaggcgggggaggagcgcgcggccgaggacgccgccgtgctc
acggctgccgagcccgtcgtcgaggagaccgcggagacaccggagagcgccgagacgacg
gccgaggagtcggtggccgcggtccccgctccggtgggagccgctccggtggagccggtt
ccggtctcaccagccgtgacgacggtcgagccggtcgtggaggaggcccccgagccggcc
gccgagccggccgtcgcctccgacgaggcgccggcgaccgggcgcccgcgccgtcgccgg
gcggccagccgtccggcgggtccgcccgtctcctga
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