Blastococcus sp. PRF04-17: MVA48_11930
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Entry
MVA48_11930 CDS
T08406
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blap
Blastococcus sp. PRF04-17
Pathway
blap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MVA48_11930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blap03400
]
MVA48_11930 (mfd)
Enzymes [BR:
blap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MVA48_11930 (mfd)
DNA repair and recombination proteins [BR:
blap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MVA48_11930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
AroM
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UOX99761
LinkDB
All DBs
Position
complement(2334647..2338183)
Genome browser
AA seq
1178 aa
AA seq
DB search
MTLRGVLDVVLTDPGMARVVGSAGNATLAVTAPPPAQPLVAAALAAQKPGAGVPVLVVTA
GERDAEGVADFLRCVVPGRRVETFPAWETLPHERLSPRADTVGRRLAVLRDLTHPGENGG
VDVLVAPVRSVLQPLAPGLGDLVPVELRPGAEADLDDVARALLDAAYTRVELVEKRGEFA
VRGGLLDVFPPTEPHPVRVEFWGDEVDELRYFSAADQRSLDERPERLWAPPCRELLLSPE
VRERAAALAVEHPELAEILGKLAEGIAVEGMESLIPVLVPGDMQLLTDLVARGTHVLVCD
PERVRSRAADLVRTAEEFLAASWATAAEAGQAPIDLGASSFRDLAEVETAARIRGLPWWT
TGAFTLGDDDEHVTLDATVVDRFSGDVPKAVEQVRDWTRDGWRVVVTFAGPGPAQRAADQ
FAEADLGVRLVPDVAAAPEGGLTYVTQGTLESGFAFPGVRLALLTEHDLTGQRGATMREA
VKMPARRRNAVDLVQLQPGDLVVHEHHGIGRYVEMVSRTVNGGQRDYLIVEYAPSKRNQP
PDRLFVPTDALDQLTRYVGGESPALSKLGGADWQKTKGQARKAVKQIAAELIRLYSARMA
TKGHTFGPDTVWQRELEDAFPFQETPDQLAAIDEVKADMMQPVPMDRIICGDVGYGKTEI
AVRAAFKAVQDGKQVAVLVPTTLLANQHFKTFSERVAQFPVRVAVLSRFQSDAESRQIIE
ELARGEIDILVGTHRLLQPTTRFKDLGLVIVDEEQRFGVEHKEYLKTMRTAVDVLSMSAT
PIPRTLEMSLTGIREMSTILTPPEERHPVLTYVGAWDDKQMAAAIRRELLRDGQVFVIHN
RVQSIDKAAAKIRNLVPEARVAVGHGQMKEHELEKIMVGFWEKEYDVLVSTTIVESGLDI
PNANTLIVDRADTFGLSQLHQIRGRVGRGRERAYAYFTYDPTRTLTETSVDRLTTIAHNT
DLGAGMAVAMKDLEIRGSGNLLGGEQSGHIAGVGFDLYVRLVGEAVADYRAQVTGESAPA
EPVEVRVDLPVDAHLPHDYVPGERLRMEAYRKVASIQDDAQAQAVLDELTDRYGAPPAPV
LNLVAVARFRVAMRALGITEVSLQGRAIRISPVALPESKQMRLARLAEGASYKAAVETIS
LKVPVGPDRRTPLRDVALLENLHATLTAVLETPVAAAS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtgaccttgcgcggcgtgctcgacgtcgtcctcaccgaccccggcatggcgcgcgtggtc
ggctcggcgggcaacgcgacgctcgccgtcaccgcgccgccgcccgcgcagccgctggtc
gccgcggcgctggcggcgcagaagccgggcgcgggtgtgccggtcctcgtggtcaccgcg
ggggagcgggacgcagaaggggtcgccgacttcctgcgctgcgtcgtccccggccggcgc
gtcgagacgttccccgcctgggagacgctgccccacgagcggctgagtccccgcgccgac
accgtcggccggcggctcgcggtgctccgcgacctgacccatcccggcgagaacggtggg
gtcgacgtcctcgtcgcgccggtgcgcagcgtcctgcagcccctcgcccccggcctgggc
gacctcgtcccggtggagctgcggcccggcgcggaggccgatctcgacgacgtcgcccgc
gcgctgctcgacgccgcctacacccgggtcgagctggtcgagaagcgcggcgagttcgcc
gttcgcggcggcctgctcgacgtgttcccgccgaccgaaccgcacccggtgcgcgtggag
ttctggggcgacgaggtcgacgagctgcgctacttctccgccgccgaccagcgctcgctg
gacgagcggccggaacggctgtgggcgccgccgtgccgcgagctgctgctctcgcctgag
gtccgcgagcgcgcggccgccttggccgtcgagcaccccgagctcgcggagatcctcggc
aagctggccgagggcatcgccgtcgagggcatggagtcgctcatcccggtgctcgtgccg
ggggacatgcagctgctgaccgacctggtggctcgcggcacgcacgtgctggtgtgcgac
cccgagcgggtgcgcagccgcgccgccgacctggtgcgcacggcggaggagttcctcgcc
gcgtcgtgggccaccgcggcggaggccggtcaggcgccgatcgacctcggggcgtcgtcc
ttccgcgacctggccgaggtcgagaccgccgcccgcatccgcggcctgccgtggtggacc
acgggcgccttcaccctcggggacgacgacgagcacgtcaccctcgacgccacggtggtc
gaccggttctcgggtgacgtgcccaaggccgtcgagcaggtgcgcgactggacccgcgac
ggctggcgcgtggtcgtcaccttcgccgggccgggcccggcgcagcgcgcggccgaccag
ttcgccgaggccgacctcggcgtgcggctggtcccggacgtcgcggccgcgccggagggc
gggctgacctacgtcacgcagggcaccctggagagcggcttcgccttccccggcgtgcgg
ctggcgctgctcaccgagcacgacctcaccgggcagcgcggcgccaccatgcgggaggcg
gtcaagatgcccgcccggcggcgcaacgccgtcgacctggtgcagctccaaccgggggac
ctcgtcgtccacgagcaccacggcatcggccgctacgtcgagatggtcagccgcacggtc
aacggcggccagcgcgactacctgatcgtcgagtacgcgccgagcaagcggaaccagccg
ccggaccggctgttcgtgcccaccgacgccctcgaccagctgacccggtacgtcggcggg
gagagcccggcgctgtcgaagctgggcggcgccgactggcagaagaccaaggggcaggcc
cgcaaggcggtcaagcagatcgccgcggagctcatccggctctacagcgcgcgcatggcg
accaagggccacacgttcgggccggacaccgtctggcagcgggagctcgaggacgccttc
ccgttccaggagacccccgaccagctcgcggccatcgacgaggtcaaggccgacatgatg
cagccggtgccgatggaccggatcatctgcggcgacgtcggctacgggaagaccgagatc
gccgtgcgcgcggcgttcaaggcggtccaggacggcaagcaggtcgccgtgctggtgccg
acgacgctgttggcgaaccagcacttcaagacgttctccgagcgggtcgcgcagttcccg
gtgagggtcgccgtcctctcccggttccagtccgacgccgagtcgcggcagatcatcgag
gagctcgcgcgcggcgagatcgacatcctggtcggcacccaccggctgctgcagccgacg
acgcggttcaaggacctgggtctggtgatcgtcgacgaggagcagcgcttcggcgtcgag
cacaaggagtacctgaagaccatgcggacggcggtcgacgtcctgtcgatgtccgccacc
ccgatcccgcgcacgctggagatgtcgctgaccggcatccgcgagatgtcgacgatcctc
accccgccggaggagcggcacccggtgctgacctacgtgggcgcgtgggacgacaagcag
atggccgcggcgatccgccgggagctgctgcgcgacggccaggtcttcgtcatccacaac
cgggtccagtcgatcgacaaggcggcggcgaagatccggaacctggtgcccgaggcccgc
gtcgccgtcggccacggccagatgaaggagcacgagctcgagaagatcatggtcggcttc
tgggagaaggagtacgacgtcctggtctcgaccacgatcgtcgagtccggcctcgacatc
ccgaacgcgaacacgctgatcgtcgaccgggccgacaccttcggtctgtcccagctgcac
cagatccgcggccgcgtgggccgtggccgcgagcgcgcctatgcgtacttcacctacgac
ccgacccggacgctgaccgagacgtcggtcgaccggctgacgaccatcgcgcacaacacc
gacctcggcgccggcatggcggtggccatgaaggacctcgagatccgcggctcgggcaac
ctgctcggcggcgagcagtccggccacatcgccggcgtgggattcgacctctacgtccgg
ctggtcggcgaggccgtggccgactaccgcgcccaggtcaccggtgagtcggccccggcg
gagccggtcgaggtccgggtcgacctgccggtcgacgcccacctcccgcacgactacgtg
ccgggggagcgcttgcgcatggaggcctaccgcaaggtcgcctcgatccaggacgacgcc
caggcgcaggccgtgctcgacgagctcaccgaccggtacggcgccccgcccgcgccggtg
ctcaacctggtcgcggtcgcccggttccgggtggcgatgcgggcgctcggcatcaccgag
gtgtcgctgcagggtcgcgcgatccggatcagcccggtcgcgctgccggagtccaagcag
atgcggctggcccgcctggccgagggcgcctcgtacaaggcggcggtggagaccatctcg
ctgaaggtgcccgtcggccccgaccgccgcacgccgctgcgcgacgtcgcactgctggag
aacctgcacgccacattgaccgccgtcctggagaccccggtcgccgcggccagctga
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