Blastococcus sp. PRF04-17: MVA48_15525
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Entry
MVA48_15525 CDS
T08406
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
blap
Blastococcus sp. PRF04-17
Pathway
blap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MVA48_15525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blap03019
]
MVA48_15525
03400 DNA repair and recombination proteins [BR:
blap03400
]
MVA48_15525
Enzymes [BR:
blap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MVA48_15525
Messenger RNA biogenesis [BR:
blap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MVA48_15525
DNA repair and recombination proteins [BR:
blap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MVA48_15525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
MGS
Motif
Other DBs
NCBI-ProteinID:
UOY00403
LinkDB
All DBs
Position
complement(3073436..3075094)
Genome browser
AA seq
552 aa
AA seq
DB search
MSTAAPTSDLAVEALGVLRELTGRPDAMFREGQDAAVAALVERSQRALVVQRTGWGKSAV
YFVSTALLRRRGAGPTLLVSPLLALMRDQVAAAARAGIRAVEISSANMTEWDDIAARLTA
DDVDVLLVSPERLTNPRFREEQLPGLVARCGLVVVDEAHCVSDWGHDFRPDYRRIRDLLG
TLPAGTPVLATTATANERVVADVAEQLGAGGVEVTTVRGPLSRDSLRLGVLRLPSDRARL
AWLAAHLGDLPGSGIVYTLTVAAAEETAALLRDAGYDVRAYTGRLDDADRKDAEEALRNN
EVKALVATSALGMGFDKPDLGFVVHLGAPSSPVSYYQQVGRAGRAVEHADVLLLPGPEDL
AIWQWFATSSMPREDHAAAVLTAMADGKAWSVARLETVADVRRSRLELLLKVLAVDGAVE
RVQGGWRSTGRPWVYDADRYARVARTREAEQRAMIAYARPVDEAQCRMAFLQEALDDPTA
APCGRCDVCAAPGTRPTCPPRLPTPRPRCSTALGWSWLPGRCGRPAPIASASTSRARSRP
PSRSRPAGPSPG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgctgcaccgacgtccgatctcgccgtcgaggccctgggcgtcctgcgcgag
ctcaccggacggcccgacgccatgttccgcgaggggcaggacgccgcggtggccgcgctg
gtcgagcgctcgcagcgcgccctcgtcgtgcagcgcaccgggtggggcaagtcggcggtg
tacttcgtctccaccgcgctgctgcgccgccgcggcgccgggccgacgctgctggtgtcg
ccgctgctggcgctcatgcgcgaccaggtcgccgccgccgcccgcgcgggcatccgcgcg
gtcgagatctccagcgcgaacatgaccgagtgggacgacatcgccgcccgcctcaccgct
gacgacgtcgacgtcctgctggtctcgccggagcggctgaccaacccgcgcttccgcgag
gagcagttgcccggcctggtcgcccgctgcggtctggtggtcgtcgacgaggcgcactgc
gtctcggactgggggcacgacttccggcccgactaccggcgcatccgcgacctgctgggc
acgctcccggccggcacgccggtgctggcgacgacggcgacggcaaacgagcgcgtggtg
gccgacgtcgccgagcaactgggcgccggcggggtcgaggtgaccaccgtccgcgggccg
ctgtcgcgcgactcgctgcgcctgggcgtgctgcgcctcccgtcggaccgggcccgcctg
gcctggctggccgcccacctcggtgacctgccgggcagcggcatcgtctacacgctgacc
gtcgccgccgccgaggagacggcggcgctgctgcgcgacgccggctacgacgtccgcgcc
tacaccggccggctcgacgacgccgaccggaaggacgccgaggaggccctgcgcaacaac
gaggtcaaggcgctggtggccacatcggcgctgggcatgggcttcgacaagcccgacctc
gggttcgtcgtccacctcggggccccgtcgtcgccggtcagctactaccagcaggtcggc
cgcgccggccgcgccgtcgagcacgccgacgtcctgctgctgcccggcccggaagacctc
gcgatctggcagtggttcgccacctcgtcgatgccgcgggaggaccacgccgcggccgtg
ctcaccgccatggccgacggcaaggcctggtcggtggcacggctggagacggtggccgac
gtccgccggtcccggctcgagctgctgctcaaggtgctcgccgtcgacggggcggtggag
cgggtgcagggcggctggcgctcgaccggccggccctgggtctacgacgccgaccggtac
gcccgggtcgcccggacccgcgaagcggagcagcgggcgatgatcgcctacgcgcggccg
gtcgacgaggcgcagtgccgcatggcattcctgcaggaggcgctcgacgacccgaccgcc
gcgccgtgcggccgctgcgacgtgtgtgccgcccctggtactcgaccgacgtgcccgccg
cggctgccgacgccgcgtccgcggtgctcgaccgccctggggtggagttggctccccggg
cgatgtggccgaccggcgccgatcgcctcggcgtcgacgtcaagggcaagatcgcgcccg
ccgagcagatcgagaccggccgggccgtcgcccggctga
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