Blastococcus sp. PRF04-17: MVA48_19060
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Entry
MVA48_19060 CDS
T08406
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
blap
Blastococcus sp. PRF04-17
Pathway
blap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MVA48_19060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blap03021
]
MVA48_19060
03400 DNA repair and recombination proteins [BR:
blap03400
]
MVA48_19060
Enzymes [BR:
blap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MVA48_19060
Transcription machinery [BR:
blap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MVA48_19060
DNA repair and recombination proteins [BR:
blap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MVA48_19060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UOY01044
LinkDB
All DBs
Position
3758849..3762754
Genome browser
AA seq
1301 aa
AA seq
DB search
MLDVNFFDELRIGLATGDDIRQWSHGEVKKPETINYRTLRPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKIIYFAAYLITSVDDEARHRDLPTIEAEISAEKSNLEGRRDADVEARQQKLEAD
LAELEAEGAKSDVRRKVREGGEREMRQLRDRAQREIDRLEEVLDTFRKLEVKQLIADEGL
YRELRDRFGEYFEGGMGAAALQKLLADFDLDAEAASLRETIRSGKGQRKLRALKRLKVVA
AFQQTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDMNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPADGRPITAPTQDMVLGLYHLTTLVPSRHEADG
GTPAAYASAAEALMAFDMGALALQERALIRLDEVFDVDNGKVNDAWEQPEDWTPGQPAVV
ETSLGRVLFNEALPEDYRFVNYQVPKKELGAIVNDLAERYPKVQVAATLDALKAAGFRWA
TRSGVTIAIDDVVTPPVKREILDRHEAEAAKIEKQYERGVITDAERRGELIEIWTRARAE
VSQAMVDNFPTTNPVWVMVNSGARGNMMQISQIAGMRGLVANPKGEIIPRPIKANFREGL
SVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGVIMPIGTV
VDGVVTRDAHVETSVYARALSADVVAEDGTVIAEANADLGDVLIQTLIDAGVSEVKVRCV
LTCESLLGTCATCYGRSLASGKLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGADI
THGLPRVVELFEARVPKGKAPIAELAGSVRIEDSEQFRKLTITPDDGSDEVVYDKLSRRA
QLRVEDGAHVEVGEQLTEGAVDPHEVLRIMGPREVQLHLVREVQEVYRSQGVSIHDKHIE
VIIRQMLKRVTIIDSGATEFLPGALVERTLFETENRRVVAEGGEPASARPVLMGITKASL
ATESWLSAASFQETTKVLTDAAIQGKSDSLLGLKENVIIGKLIPAGTGISRYRNITVEPT
EEARAAVYTMAGYDDGQYYSPDVFGQGTGEAVRLEEYDWRG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
ttgctggacgtcaacttcttcgacgagttgcgcatcggcctggccaccggcgacgacatc
cgccagtggtcgcacggtgaggtgaagaagcccgagaccatcaactaccggaccctgcgt
ccggagaaggacggtctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggtaagtacaagcgggtccggttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgggccaaggtccgtcgcgagcgcatgggccacatcgagctcgccgctccg
gtgacccacatctggttcttcaagggtgtcccctcgcgcctgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacctgatcacctcggtcgac
gacgaggcgcgccaccgcgacctcccgaccatcgaggccgagatcagcgccgagaagtcc
aacctcgaggggcggcgcgacgccgacgtcgaggcgcggcagcagaagctcgaggccgac
ctggccgagctggaggcggagggcgccaagtccgacgtccgccgcaaggtgcgcgagggc
ggcgagcgcgagatgcgccagctgcgcgaccgggcccagcgcgagatcgaccgcctcgag
gaggtgctcgacaccttccgcaagctggaggtcaagcagctcatcgccgacgagggcctc
taccgcgagctgcgcgaccgcttcggtgagtacttcgagggcggcatgggcgccgcggcg
ctgcagaagctgctcgccgacttcgacctcgacgccgaggccgcctcgctgcgcgagacc
atccgcagcggcaagggccagcgcaagctgcgggcgctcaagcggctgaaggtcgtcgcg
gccttccagcagacccgcaactcgccgatgggcatggtgctggactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgaccagcgacatg
aacgacctctaccgccgcgtcatcaaccggaacaaccggctgaagcgtctgctcgacctc
ggcgcccccgagatcatcgtgaacaacgagaagcggatgctccaggagtccgtcgacgcg
ctgttcgacaacggccgtcggggccggccggtcaccggcccgggcaaccgtccgctgaag
tccctgagcgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggccctggagctgttcaagcccttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgggcccgc
ccggtcgtgtgggacgtgctggaggaggtcatcaccgagcacccggtgctgctcaaccgc
gcgcccacgctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcgagcaacaacatcttgtcgccggccgacggtcgcccgatcaccgcgccgacccaggac
atggtgctcggcctgtaccacctgacgaccctggtgccctcgcggcacgaggccgacggt
ggcacgcccgcggcctacgcctcggcggccgaagccctgatggccttcgacatgggcgcc
ctggccctgcaggagcgcgcgctgatccgcctcgacgaggtcttcgacgtcgacaacggc
aaggtcaacgacgcgtgggagcagccggaggactggacccccggccagccggccgtggtg
gagaccagcctgggacgggtcctgttcaacgaggccctgcccgaggactaccgcttcgtc
aactaccaggtgccgaagaaggagctcggggcgatcgtcaacgacctcgccgagcgctac
cccaaggtccaggtcgcggcgaccctggacgccctcaaggccgccggcttccgctgggcg
acccgctcgggcgtcacgatcgccatcgacgacgtggtgaccccgccggtgaagcgggag
atcctcgaccggcacgaggccgaggccgccaagatcgagaagcagtacgagcgcggcgtc
atcaccgacgccgagcgtcgtggcgagctgatcgagatctggacccgcgcgcgggccgag
gtcagccaggcgatggtggacaacttcccgaccaccaacccggtctgggtcatggtcaac
tcgggcgcccgaggcaacatgatgcagatcagccagatcgccggcatgcgtggtctggtc
gccaacccgaagggcgagatcatcccgcggccgatcaaggccaacttccgggagggtctg
tccgtgctggagtacttcatctccacgcacggtgcccgcaagggtctggccgacacggcg
ctgcgcaccgccgactccggttacctcacccgccggctggtcgacgtctcgcaggacgtc
atcattcgcgaggaggactgcggcaccgaccgcggcgtcatcatgccgatcggcaccgtt
gtcgacggggtcgtcacgcgtgacgcgcacgtggagaccagcgtctacgcccgcgccctg
tccgccgacgtggtggccgaggacgggacggtcatcgccgaggcgaacgccgacctgggc
gacgtcctcatccagacgctgatcgacgccggtgtgtccgaggtcaaggtccgctgcgtg
ctcacctgcgagtcgctgctgggcacctgcgccacctgctacggccggtcgctggcctcc
ggcaagctggtggacgtcggcgaggcggtcggcatcatcgccgcccagtccatcggtgag
ccgggtacccagctgacgatgcgcaccttccacaccggtggtgtggccggcgcggacatc
acgcacggtctgccgcgtgtggtggagctcttcgaggcccgcgtccccaagggcaaggcc
ccgatcgccgagctggcgggctccgtccggatcgaggacagcgagcagttccgcaagctg
accatcacgccggacgacggctccgacgaggtcgtctacgacaagctgtcgcgccgcgcg
cagctgcgggtcgaggacggtgcacacgtcgaggtcggcgagcagctcaccgagggtgcc
gtcgacccgcacgaggtgctgcggatcatgggcccccgcgaggtgcagctgcacctggtc
cgcgaggtccaggaggtctaccgctcgcagggtgtgtcgatccacgacaagcacatcgag
gtgatcatccgccagatgctgaagcgggtgaccatcatcgactcgggcgccacggagttc
ctgccgggcgcgctcgtcgagcggacgctgttcgagaccgagaaccgccgcgtcgtcgcc
gagggcggcgagccggcctcggcccgtccggtgctcatgggcatcaccaaggcctcgctc
gcgaccgagtcgtggctgtcggccgcctccttccaggagacgaccaaggtgctcaccgac
gccgcgatccagggcaagagcgacagcctgctcgggctcaaggagaacgtgatcatcggc
aagctgatcccggcgggcacgggcatcagccgctaccggaacatcacggtcgagccgacc
gaggaggcccgcgccgcggtctacaccatggccgggtacgacgacgggcagtactacagc
cccgacgtcttcggtcagggcaccggcgaggccgtgcgcctcgaggagtacgactggcgg
ggctga
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integrated database retrieval system
