Blastococcus sp. PRF04-17: MVA48_20990
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Entry
MVA48_20990 CDS
T08406
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
blap
Blastococcus sp. PRF04-17
Pathway
blap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MVA48_20990 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blap03021
]
MVA48_20990 (rho)
03019 Messenger RNA biogenesis [BR:
blap03019
]
MVA48_20990 (rho)
Transcription machinery [BR:
blap03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MVA48_20990 (rho)
Messenger RNA biogenesis [BR:
blap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MVA48_20990 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UOY01389
LinkDB
All DBs
Position
4124098..4126152
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AA seq
684 aa
AA seq
DB search
MSETTDLVPTGAQGAAGTGEAPAASGTTASPRRRGNGLSGMLLPELQRLAAELGISGTGR
MRKGDLVAAISARQVGGGSAPAETATPGGSTNAPADAAPAARGIAAEAAPLEAPISGGAN
GGPVTGATGDTGSPVRTRRGARRPAGAPSAESTAESTGAEASASDTATGTTTDTDTDTSP
ADGDQRADDERPQRNRDRGERGGRNRDRDGGERGNRDANRDANRDGNRDANRGPDRSERN
DRGGRPDNRPDNRTEGSRADRDNDGDDDDFEGGRGRRGRRYRDRNRRGGSNGRDRFEQNE
PTVSEDDVLLPVAGILDVLDNYAFVRTSGYLTGPNDVYVSLSQVRRYGLRRGDAVTGAVR
QPRDGERKDKYNALVRLDTVNGLDPEQAKQRPEFTKLTPLYPQERLRLETEPHQLTTRVI
DLVMPIGKGQRALIVSPPKAGKTMVLQALANAITTNNPECHLMVVLVDERPEEVTDMQRS
VKGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASG
RILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTMDTVIFEEFKGTGNAE
IKLDRRLADKRVFPAVDVNASGTRKEEILMSPDELAIVIKLRRVLAALEPQQALELLLDK
LKKTRNNVEFLMQIQKTTLGPTND
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaaaccaccgacctcgttcccaccggcgcgcagggcgctgccggcacgggcgag
gcgcctgccgcttctgggacgacggcaagcccccgtcgccgcggcaacggcctgtcgggg
atgctgctgcccgagttgcagcgcctcgcggccgaactgggcatctccggcacgggccgg
atgcgcaagggcgacctcgtcgccgccatctccgcacgccaggtgggcggcgggtccgcc
ccggcggagaccgcgacccccggcggctcgacgaacgcccccgccgacgcagcgccggcc
gcccgtggcatcgccgccgaggccgctccgctcgaggcgccgatcagcggcggcgccaac
ggtggcccggtgaccggcgcgaccggcgacaccggcagccccgtgcgtacccggcgcggt
gcccggcgtcccgccggcgcccccagcgccgagagcaccgccgagagcaccggcgccgag
gccagcgcgagcgacaccgcgaccggaacgacgaccgacaccgacaccgacacctctccg
gccgacggcgaccagcgtgccgacgacgagcgtccgcagcgcaaccgcgaccgcggcgag
cgcggcggccgcaaccgcgaccgtgacggcggcgagcgcggcaaccgcgacgccaacagg
gacgccaaccgcgacggcaacagggacgccaaccgcggccccgaccgcagcgagcgcaac
gaccgcggcggccgtccggacaaccgccccgacaaccgcaccgaggggtcgcgcgccgac
cgcgacaacgacggtgacgacgacgacttcgagggcggtcgcggccgccgcgggcgtcgc
taccgcgaccgcaaccgtcgcggcgggagcaacggtcgcgaccgtttcgagcagaatgag
ccgaccgtcagcgaggacgacgtcctgctccccgtcgccggcatcctcgacgtcctcgac
aactacgcgttcgtccggacgtcgggctacctgaccggtcccaacgacgtctacgtgtcg
ctgtcgcaggtccgccgctacgggctgcgccgtggtgacgccgtcaccggcgccgtccgg
cagccgcgcgacggcgagcgcaaggacaagtacaacgcgctggtccgtctggacacggtc
aacgggctcgacccggagcaggccaagcagcggccggagttcaccaagctcacgccgctc
tacccgcaggagcgcctgcggctggagaccgagccgcaccagctgaccacccgggtcatc
gacctggtcatgccgatcggcaagggccagcgtgcgctcatcgtcagcccgccgaaggcc
ggcaagacgatggtgctgcaggccctggccaacgcgatcaccacgaacaaccccgagtgc
cacctgatggtcgtgctcgtcgacgagcggcccgaagaggtcaccgacatgcagcgctcg
gtgaagggcgaggtcatcgcctcgaccttcgaccggccgccgtcggaccacaccacggtc
gcggagctgtcgatcgagcgggccaagcgcctggtcgagatggggcacgacgtcgtcgtc
ctgctggactcgatcacccgcctgggccgcgcgtacaacctggcggcccccgccagcggg
cgcatcctgtccggtggcgtcgactccacggcgctctacccgcccaagcgcttcctcggc
gccgcccgcaacatcgagaacggcggctcgctgacgatcatcgcctcggcgctggtcgag
acgggctccaccatggacacggtcatcttcgaggagttcaagggcaccggtaacgcggag
atcaagctggaccgccgcctggcggacaagcgggtcttcccggccgtcgacgtcaacgcg
tcgggcacgcgcaaggaggagatcctcatgtcgcccgacgagctggccatcgtcatcaag
ctgcgccgggtgctcgccgccctcgagccgcagcaggcgctggagctcctgctcgacaag
ctgaagaagacccgcaacaacgtcgagttcctcatgcagatccagaagacgacgctgggc
ccgaccaacgactga
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