Blastococcus sp. PRF04-17: MVA48_22175
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Entry
MVA48_22175 CDS
T08406
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
blap
Blastococcus sp. PRF04-17
Pathway
blap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MVA48_22175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blap03019
]
MVA48_22175
Messenger RNA biogenesis [BR:
blap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MVA48_22175
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UOY04088
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All DBs
Position
4351480..4353105
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AA seq
541 aa
AA seq
DB search
MALGGLGEIGRNMAVLEFDGQLLVIDCGVLFPEAEQPGVDLILPDFGVIEHRLDDITAVV
LTHGHEDHIGALPYLLRLRGDIPLVGSRFTLALVAAKLREHRIDPTLVEVAAGDDHLVGP
FHCEFISVNHSIPDALAVAVHTPAGVLVHTGDFKMDQLPLDGVLTDLGAFARLGMSGIDL
LLSDSTNAEVPGFVTPERSIGPVLEDVFARATQRLIVSSFASHVHRIQQVLDAAQMHRRK
VAFVGRSMVRNMGVARDLGLLRVAPGLMVSLDEAAAMPPEQVVLVSTGSQGEPLSALGRM
ARGEHHQVTIESGDTVVLASSLVPGNETAVYKVINGLARLGATVVHKETARVHVSGHAPA
GELRTLLNVAKPRYLMPVHGEWRHLRAHAALALETGMTRDQVLLAEDGVVVDLVDGKAAI
VGSVPIGDVYVDGLNVGDVGEESLQARRILGDEGFVALTVVIELSTRTIVRDLHLSTRGF
SDDPGAFDGALQLVEENLKRALEDDDVDPHRLSQVIRRTIGKWVSDTYRRRPMIIPTVLE
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcggcggcctgggcgagatcggccgcaacatggcggttctcgagttcgacggg
cagctgctggtcatcgactgcggcgtgctgttccccgaggccgagcagccgggcgtcgac
ctgatcctccccgacttcggggtcatcgagcaccgcctcgacgatatcaccgccgtcgtc
ctgacccacgggcacgaggaccacatcggggctctgccctacctgctgcggctgcgcggc
gacatcccgctcgtcgggtcccggttcaccctcgcgctggtcgccgccaagctgcgcgag
caccgcatcgacccgacgctggtcgaggtcgcggcgggcgacgaccacctggtcgggccg
ttccactgcgagttcatctcggtcaaccactcgatccccgacgccctggcggtcgccgtg
cacacgcccgccggcgtgctcgtgcacaccggcgacttcaagatggaccagctgccgctg
gacggcgtcctcaccgacctgggcgccttcgcccggctcggcatgagcggcatcgacctg
ctgctgtcggactcgacgaacgccgaggtccccggcttcgtgacccccgaacgctcgatc
ggccccgtgctcgaggacgtcttcgcccgggccacccagcggctgatcgtctccagcttc
gccagccacgtgcaccgcatccagcaggtcctcgacgccgcgcagatgcatcgccgcaag
gtcgccttcgtcggccggtcgatggtccgcaacatgggcgtcgcccgcgacctcggcctg
ctccgggtcgctcccggcctgatggtgtccctggacgaggctgccgccatgccgcccgag
caggtggtgctggtcagcaccggttcccagggcgagccgctctcggcgctgggccgcatg
gcccgtggcgagcaccaccaggtcaccatcgagtccggcgacaccgtggtcctggcctcg
tccctggtgccgggcaacgagaccgccgtgtacaaggtgatcaacgggttggcccgcctc
ggcgccaccgtcgtgcacaaggagacggcgcgggtgcacgtgtccggccacgcgccggcc
ggcgagctgcgcaccctgctcaacgtcgccaagccgcgctacctcatgccggtgcacggc
gagtggcgccacctgcgggcgcacgccgcgctggcgctggagaccggcatgacgcgcgac
caggtgctgttggccgaggacggcgtggtggtcgacctggtcgacggcaaggcggccatc
gtgggcagcgtgccgatcggcgacgtctacgtcgacgggctcaacgtcggcgacgtgggg
gaggagtcgctgcaggcccggcgcatcctcggcgacgagggcttcgtggccctcaccgtc
gtcatcgagctctccacgcggaccatcgtgcgggacctgcacctgtccacccgcgggttc
tccgacgaccccggtgccttcgacggggccctgcagctggtcgaggagaacctcaagcgg
gccctcgaggacgacgacgtcgacccgcaccggctctcgcaggtcatccgccgcaccatc
ggcaagtgggtgtcggacacctaccgccgccggccgatgatcatcccgacggtcctcgag
gtctga
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