Blautia parvula: LC508_21395
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Entry
LC508_21395 CDS
T09421
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blar
Blautia parvula
Pathway
blar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LC508_21395 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blar03400
]
LC508_21395 (mfd)
Enzymes [BR:
blar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC508_21395 (mfd)
DNA repair and recombination proteins [BR:
blar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LC508_21395 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
MFD_D3
DAPDH_C
RecG_dom3_C
AAA_22
DUF3136
UB2H
Motif
Other DBs
NCBI-ProteinID:
UBU20508
LinkDB
All DBs
Position
4679613..4683182
Genome browser
AA seq
1189 aa
AA seq
DB search
MQAVIQPLLNLNEYQEIRSRLPKNRGVLQLSGCIESQKAHVMYGLFEGMRQDGKRDNTNC
LIIAENDLKAKELYEDYRFYDREVLLYPAKDLIFFQADIHGNLLTKQRMQVIAALLQKKG
VTVITSMGGCMDYLLPLSVIEQHVLHFKNDSVLDLQKLKKDLINMGFEYSAQVEAPGQFA
IRGGIVDLFLLTEENPIRIELWGDEIDSIRSFETESQRSIENLEEITIYPAAEMVLTQEV
LEKGLKAIEKEKNTSVKKLREAFLTEEAGRLKNTVEEAVNAMKEFEDFAAAEHFIRYFYK
EPVTFLDYFDEDNTLVFLDETNRLLEKGEAVETEFRESMKNRLEKGYLLAGQTDLLCGWK
KVVYRLNRKNCVSVCTMEQQKADWEINGQYRTVTKSVNSYNNSFELLVKDLKYWKKNGYQ
VLLLSGSRTRAQRLAQDLQEQELNSFYTEDMDRTISPGEIMTAYGHAKRGFEYPLIKFVL
ITETDIFGQEKKKRRKKTEYSRKKIQSFSELNVGDYVVHENHGLGIYRGIEKVTVDKIVK
DYIKIEYSGRSNLYILATQLDMLQKYAGADAKAPKLNKLGGQEWKKTKTRVRGAVKNIAK
DLVALYAARQSQNGYQYGPDTVWQKEFEEMFPFEETEDQLNAIDAAKHDMESRKIMDRLV
CGDVGYGKTEIAIRAAFKAVQESKQVVYLVPTTILAQQHYNTFIQRMKDFPVRVDLLCRF
KTPAEQKKTITDLQKGLVDIVIGTHRLLSKDVKYKDLGLLIVDEEQRFGVTHKEKIKSLK
ENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRTPIQTYVMEYNEEMVREAVSREI
ARGGQVYYVYNRVNDIDEITNRVAKLVPEANVAFAHGQMHEHQLEKIMYGFINGEIDVLV
STTIIETGLDISNANTMIIHDADQMGLSQLYQLRGRVGRSNRTAYAFLMYKRNKMLKEVA
EKRLHAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYDLYCKMLSEAVKEA
KGIKQQEDFETTIDMDMDAFIPPRYIPNEYQKLDIYKRIAGIENQEEYEDMLEELMDRFG
EPPKSVQNLLAIANLKALAHKVYVREIKQNGTEVKISMFERAELDASGFPAILEKYKNNM
TMRMEGQPYFLVSLKGRRPKEILDAMEILSGILHEFEGILQEKEENPLP
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcagtcatacagccacttttaaatttaaatgaatatcaggaaatcagaagccgc
cttccaaagaacaggggtgttctgcagctgtccggctgcattgaatcccagaaagcccat
gtgatgtacggcctgtttgagggcatgaggcaggacgggaagcgggacaataccaattgt
ctcatcattgccgaaaatgacctgaaggcaaaagaactctatgaggattaccgtttttac
gacagggaggtgcttctctaccctgcaaaggatctgattttcttccaggcagatatccac
ggaaatctgctgacgaaacagaggatgcaggtgatcgcagcccttctgcagaagaaaggt
gtgaccgtcatcaccagtatgggcggctgcatggactatctgctgccgctgtccgtcatt
gagcagcacgtgctgcattttaaaaatgacagtgtgctggaccttcaaaagctgaaaaaa
gatctgatcaacatgggatttgagtacagcgcccaggtggaagcgccgggacagtttgcc
atccgcggcggtattgtggacctgtttcttctcacggaggaaaaccctattcgaatagaa
ttgtggggcgatgagattgattctatccgaagctttgagacagagagccagcgctccata
gaaaatctggaggagatcaccatctatcccgcggcggaaatggtgctgacccaggaggta
ctggaaaagggcttaaaggccattgagaaggaaaagaatacatctgtgaaaaagctccgg
gaggcatttctcacagaggaggcaggcagacttaaaaacacggtggaggaagcggtaaat
gccatgaaggagttcgaggactttgcggcagcagaacactttatccgttatttttataag
gagcctgtgacatttctggactattttgatgaggataatacccttgtattcctggatgag
acaaaccgtcttctggaaaaaggggaggctgtggagacagaatttcgggagagcatgaag
aaccgcctggaaaaaggctacctccttgccggtcagacagacctgctgtgcggatggaaa
aaggtggtctaccgtctgaaccggaaaaactgtgtatccgtctgtaccatggagcagcag
aaagcagactgggaaataaacggacagtaccgcacagtcacaaaatctgtgaattcctat
aacaacagctttgagctgctggttaaagatctgaaatactggaagaagaacggctaccag
gtgcttctcctctccggttccaggacaagggcccagaggcttgcccaggaccttcaggaa
caggaactcaacagtttttacacggaggacatggacagaaccatatccccgggtgagatc
atgaccgcctacggccacgcaaagcgcggatttgaatacccgctgatcaaatttgtcctg
atcaccgaaaccgatattttcgggcaggagaagaaaaagcgcaggaagaagactgagtac
agcagaaagaagatccagagcttttccgaactgaatgtgggcgactatgtagtccatgaa
aatcatggccttggtatttaccgcggcattgagaaggtcacggtagacaaaatcgttaag
gattatattaagatcgaatactccggcaggagcaatctttacattctggcaacccagctt
gatatgctgcagaaatacgccggagcggatgcgaaagcgccgaaactcaacaaactgggc
ggtcaggagtggaagaagacaaagacaagggtaagaggcgctgtaaagaacattgccaag
gatctggtggcgctctacgctgccagacagtcccagaacggctatcagtacgggcctgac
acagtgtggcagaaggaatttgaggagatgtttccctttgaggagacggaagaccagcta
aatgccattgatgctgcaaaacacgatatggagagcaggaagatcatggaccgcctggtc
tgcggcgacgtgggatacggcaagacagagatcgccatccgggcagctttcaaagccgtg
caggagagcaaacaggtagtgtatcttgtccccacaaccattctggcacagcagcactac
aacacttttatccagagaatgaaggattttccggtccgtgtggacctgctctgccgtttt
aaaacaccggcggagcagaagaagaccataacagatctgcagaagggattggtggacatt
gttatcggcacccaccgtcttctctcaaaagacgtaaaatacaaagacctgggccttctc
atcgtggatgaggagcagcgatttggcgtgacccataaggagaagattaaaagtctgaag
gaaaatgtggatgttctcacgctgacagccactcctattccgagaaccctgcacatgagc
ctgatcggtatccgtgacatgagcgtattggaggaggcccccatggacagaactcccata
cagacctatgtcatggagtacaatgaggagatggtccgggaagctgtcagccgggagatc
gcccggggcggccaggtctattacgtttataaccgggtcaatgacatagatgagatcacc
aaccgggtagcaaagctggtcccggaggcaaatgtggcatttgcccatggacagatgcac
gagcatcaattggagaagatcatgtatggttttatcaacggtgagattgatgtgcttgtc
tccaccaccatcattgagacgggtctggacatctccaatgccaataccatgatcatccac
gatgcggaccagatgggcctgtcccagctctatcagctcaggggccgcgtgggccgttcc
aaccgcaccgcctacgcattcctcatgtataagaggaacaaaatgctcaaggaagtggcg
gaaaaacgccttcatgccatccgtgagttcacggacctgggaagcggcttcaagatcgcc
atgcgtgatttggagatccgcggtgccggaaacttactgggcgcggagcagcacggccat
atggaggcagtgggatatgacctttactgcaagatgctgagtgaggcggtaaaggaggca
aaaggaatcaaacagcaggaggacttcgagacaaccatcgacatggatatggatgccttc
atccctccccgctacattccaaacgaataccagaagctggacatatacaaacgcattgcc
ggcatagagaaccaggaggagtacgaggatatgctggaggagctcatggaccgtttcggg
gagccgccgaaatccgtacagaacctgctggcgatcgccaatctgaaggcccttgcccac
aaagtctatgtgcgtgagatcaaacagaacggcacagaggtgaaaatttccatgtttgag
cgtgcagaactggacgcttcaggattcccggctattctggaaaaatataagaacaacatg
accatgcgtatggaaggccagccatatttcctggtatctttaaagggccgcaggccaaaa
gagattctggacgctatggaaatattgtccggtattctccacgaatttgaggggatttta
caggaaaaagaggaaaatcccttgccctga
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integrated database retrieval system
