Blastomonas sp. RAC04: BSY18_1207
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Entry
BSY18_1207 CDS
T04450
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blas
Blastomonas sp. RAC04
Pathway
blas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSY18_1207 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blas03400
]
BSY18_1207 (mfd)
Enzymes [BR:
blas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSY18_1207 (mfd)
DNA repair and recombination proteins [BR:
blas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSY18_1207 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
MFD_D3
UB2H
Cas3-like_C_2
AAA_30
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AOG00731
UniProt:
A0A1B3N5U7
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All DBs
Position
1211103..1214600
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AA seq
1165 aa
AA seq
DB search
MDSISRILAAAGPLTLAGVAPGALPLLLADLARATAGRKSGGRVVFIAPDDAMMHAVAET
APFYAPDLETIEFPAWDCLPYDRASPSLAITARRLKALWTLQQPAGGPQLLVTTVNAVAQ
RTLTRFRIRQIGAELKPGMVVEREALIAKLVRQGYARTDTVADSGEFAVRGNLIDIFPAG
MDSGLRLDFFGDELDSMRAFDPGTQRSTERVERHILLPASEVLLDADSIKRFRSAYRETF
GAGATGDPLYQAISDGRRLAGMEHWLPMIEERLDTLFDHLEDNDLVLRDAGADAAADQRF
ESITDYHANRTRGNEDKTGSYRPLKPSALYLIPKEWRALQADTPVHLVSGHDEPESASVL
GLGYRAARDFGAERARGDNVYTAAAAHIDSLRAADKGAIIASYSEGSRSRLLGLLKDHGL
ARMALAGSWQEALGQAATGMAAMVVLPQDHGFATDRYELLSEQDLLGDRLVRRRKKRKSA
DAFLAELQSLSAGDLVVHIDHGIGRYEGLVSIPVGKSPHDCVWLTYSGGDKLYVPVENID
VLTRYGSESDGVPLDRLGGEAWQRRRAKLKERIQAIAGELMKTAAERALRTADVAEIDPG
TYASFVDRFPYEETEDQERVIAEVLEDLASGKPMDRLVCGDVGFGKTEVAMRAAFAAAMA
GMQVAIIAPTTLLARQHYTNFVERFQNFPLIIGRLSRLVTAGEAKTTREGLAAGTTDIVI
GTHALLAKSVEFKRLGLVIIDEEQRFGVVHKERLKSLKANVHVLTLTATPIPRTLQMAMS
GLRELSVIQTPPVDRLAVRTYVMPWDPVVIREALLREHYRGGQSYFVAPRISDLDKLGEF
IREQVPEIRHIMAHGQMAPSEVEERMSAFYDRKYDVLLSTTIVESGLDIPSANTLIIHRA
DTFGLAQLYQLRGRVGRSKTRAYAYMTTPENRVLTETAEKRLKVLGDLDTLGAGFQLASH
DLDIRGAGNLVGDEQSGHIREVGFELYQSMLEEAILEAKAGGFALDLPRQKFSPQITVDA
PILIPEDYVPDLAVRMALYRRMNDLSSGAEIESFAAEMIDRFGALPEATTNLIKLIEIKQ
NCITACVSKIDVGARGALVSFHNDSFPDVPGLLAYVERLNGVAKLRPDQKLMIQRVWGDP
ATRINGLVQLSKGLAGIVKKKAKAG
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggacagcatcagcaggattttggctgcggcaggcccgctgacgctggcgggcgtggca
cccggcgcgctgccgctgctgctcgccgatctggcgcgcgccaccgctggccgaaagtcg
ggtggccgcgtggtcttcatcgcccccgacgatgcgatgatgcacgcagttgccgaaacc
gcccccttctatgcgcccgatctcgagacaatcgagttccccgcctgggactgtctgccc
tatgaccgcgcgtcgccctcgctggcgatcacggcgcggcggctgaaggcgctgtggacg
ctgcagcagcccgcaggcggcccgcagctgctggtgaccacggtcaacgccgttgcccag
cgcactctgacgcgttttcggatccgccagatcggtgccgaactcaagcccggcatggta
gtcgagcgcgaggcgctgatcgccaagcttgtccgccagggttacgcgcgcaccgacacc
gttgccgattccggcgagttcgcggtgcgcggcaacctcatcgatatcttccccgccggg
atggacagcggcctgaggctcgatttcttcggcgacgagctcgattcgatgcgcgccttc
gatccgggcacccagcgctcgaccgagcgggtcgagcggcacatcctgctcccggcctcc
gaagtgctgctggatgccgacagcatcaagcgcttccgcagcgcctatcgcgagacgttc
ggcgcgggtgccaccggcgatccactgtatcaggcgatcagcgacggcaggcgcctcgcg
gggatggagcactggctgccgatgatcgaggagcggctcgatacgctgttcgatcatctc
gaagacaatgacctcgtgctgcgcgatgccggcgccgatgccgccgccgaccagcgtttc
gagagcatcaccgactaccacgccaaccgcacccgcgggaacgaggacaagaccggcagc
tatcgcccgctcaagccctctgcactctatctgatccccaaggagtggcgcgcgctgcag
gcagacacgccggtgcacctcgtcagcggccatgacgagccggaatcggcgagcgtactg
ggcctcggttatcgcgcggcgcgcgatttcggcgctgaacgcgcacgcggcgacaatgtc
tacaccgcggctgccgcgcatatcgattcgctgcgcgcggccgacaagggcgcgatcatc
gcgagctattcggaaggctcgcgcagccgtctgctcgggttgctcaaggaccacgggctc
gcgcgcatggcgctggctggcagctggcaggaggcgctgggccaggctgcaaccggcatg
gccgcgatggtcgtgctgccgcaggatcacggctttgccaccgatcgctacgagctcctg
tccgaacaggacctgctcggcgaccggctggtgcggcggcgcaagaagcgcaagtccgcc
gacgctttcctcgccgagctgcagtcgctgtcggcaggcgatctggtcgtgcatatcgat
cacggcatcggccgctatgagggcttggtctcgatccccgtcggcaagagcccgcacgac
tgcgtctggctgacctattcgggtggcgacaagctctatgtgccggtcgagaacatcgac
gtgctcacccgctatggctcggagagcgacggcgttccactcgacagattgggcggcgag
gcctggcagcgcaggcgggccaagctcaaggaacgcatccaggcgatcgccggtgagctg
atgaagaccgcagcggagcgcgcgctgcgcaccgccgatgtcgccgagatcgatccgggg
acctatgccagcttcgtcgaccgtttcccgtacgaggagaccgaggaccaggagcgagtc
atcgccgaggtgctcgaggatctggcctcgggcaagccgatggaccggctggtgtgcggc
gatgtcgggttcggcaagaccgaggtcgcgatgcgcgccgcgtttgctgcggcgatggcg
gggatgcaggtcgcgatcatcgctcccaccactttgcttgcccgccagcactacaccaac
tttgtggagcgctttcaaaatttcccgctgatcatcggccgcctgtcgcggctggtgacc
gcgggcgaggccaagacgacgcgcgaagggctggctgctggcacaaccgacatcgtcatc
ggcacgcatgcgctgctcgccaagtcggtcgagttcaagcggctggggctggtgatcatc
gatgaggaacagcgctttggcgtggtccacaaggagcggctgaagtcgttgaaggccaat
gttcatgtgctgacgctcaccgccacgccgatcccgcgcacgctgcagatggcgatgagc
ggcctgcgcgagctctcggtgatccagaccccgccggtcgaccgcctcgcggtgcgcact
tacgtgatgccctgggacccggtggtgatccgcgaggcactgctgcgcgaacattatcgc
ggcgggcaatcctatttcgtcgctccccggatcagcgatctcgacaaactgggcgagttc
atccgcgagcaggtccccgaaatccgccacatcatggcgcatggtcagatggcaccgtct
gaggtcgaggagcggatgagcgcgttctacgaccgcaagtacgatgtgcttctgtcgacc
acgatcgtcgaatccgggctcgatatccccagcgccaacacgctgatcattcaccgcgcc
gacacctttggcctcgcccagctctaccagctgcgcgggcgcgtgggccggtcgaagaca
cgcgcatatgcctacatgacaacgccggagaaccgggtgctcaccgagaccgcggaaaag
cggctcaaggtgctcggcgatctcgatactctgggagcgggcttccagctcgccagccat
gacctcgacatccgcggcgcgggcaatctggtcggcgacgagcagtcggggcatatacgc
gaggtcgggttcgagctttatcagtcgatgctcgaagaggcgatcctcgaggccaaggcg
ggcggctttgcgctcgacctgccgcgccagaagttttcgccgcagatcaccgtcgacgcc
ccaattctaatcccggaggattatgtccccgatctggcggtgcgcatggcgctatatcga
cggatgaacgacctcagcagcggcgccgagatcgaatccttcgccgccgagatgatcgat
cgcttcggcgcgctgcccgaggcgacgaccaatctgatcaagctgattgagatcaagcag
aactgcatcaccgcctgtgtctccaagatcgatgtcggcgcgcgcggcgcgctggtcagc
ttccacaacgacagcttccccgacgtaccggggctgttggcctatgtggaacggctgaac
ggcgtcgccaagctgcggccggaccagaaattgatgatccaacgggtatggggcgatccg
gcgacgagaatcaacggattggtgcagctttccaaggggctggcggggatcgtgaagaag
aaggctaaggcgggctaa
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integrated database retrieval system
