Burkholderia latens: WK25_05270
Help
Entry
WK25_05270 CDS
T04819
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
blat
Burkholderia latens
Pathway
blat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WK25_05270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blat03019
]
WK25_05270
03009 Ribosome biogenesis [BR:
blat03009
]
WK25_05270
Enzymes [BR:
blat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WK25_05270
Messenger RNA biogenesis [BR:
blat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WK25_05270
Ribosome biogenesis [BR:
blat03009
]
Prokaryotic type
rRNA processing factors
WK25_05270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOK03925
LinkDB
All DBs
Position
1:complement(1120253..1123450)
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPER
PAPSPAPQRPVEPVAAPAPVVPASGGFIGWLKGLFGMSPAPAPAPVAPAPAKEQAARPVR
ERTEKTEQRGGDRNRNRRGSAQQAQGGRDQAAASRDKPRQEREGKEAREPREPREGREPR
EAREPRENREGREGREGREGREGRGPREGREAREPRESREPRENREPRERTEQPEAVEAA
GRGERQERGERRERGERRKPTQHAATLETVTRGENHPEADAEQAVATALPGAEVAADAEA
GARDGEERRRRRRGRRGGRREREDEGAVVEHGADGEAAVQALTTADPSAIEPAHTAAPAA
VATVAAAGAAIAEAAVEQRAEAPAPAPAAVEPQSAPVRVEATPVAPIAPVEQPAPVAPAA
EPTPVATVATVATVASAAAAEAGPAPVEVSPTDAFEVPATEVPAAPVAVEVQQSAPVEQA
APAPVAAAETAPAAVEPAQVEAAPVQAAVAPALASDQSAAAAAPSSLDAVLQQAGLVWVN
TDADKLRAAQEAASRLPRPVRVPRERKALPPVDPTPMQQVETSQR
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcagaagctcatcgacatcgacatcgagacagccgggcgcgaacagcgcaagggcaat
atctacaaaggtgtcgttacccgcatcgagccgtcgctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggatgccctgcgcgaaggccaggagctgatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgcagccctcacgacgttcatctcg
ctcgccggccgctatctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgccaggaactgcgcgaaaccatggcgcagctgcagattccg
gacgggatgagcatgatcgcccgcaccgcaggcatcggccgcagcgccgaggaactgcag
tgggatctgaactacctgctgcagctgtggcgcgcaatcgaggcggcatcgcaaagcggc
aatcccggccagccgatgctgatctatctggaatcgagcctcgtgatccgagcgatccgg
gactatttccagccggatatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcccgcgcattcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcccgtttccagatcgagcaccagatcgagaccgcgtactcg
cgcacggtgccgctgccgtcgggtggcgcgatcgtgatcgaccataccgaagcgctcgtg
gcgatcgacgtgaactccgcacgtgcgaccaagggcgcagacatcgaggaaacggcgacc
cgcacgaacctcgaagcggccgacgaagtggcccgccagttgcgcctgcgcgacctcggc
ggcctgatcgtgatcgacttcatcgacatggagtcggcgaagagccagcgtgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgtgcacgcgtgcaaatgggcaagatctcc
cgcttcggcctgatggaactgtcgcgccagcgactgcgcccggcgctgtcggaaggcagc
cacgtgacgtgcccgcgctgtaacggcaccggccacatccgcgacaccgaatcgtccgca
ctgcaggtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctgaatgagaagcgtcaggaaatcaac
aagatcgagtcacgcttcaaggtcgggatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgaacgcctgcgccacgacgacgcgcgcctcgacgatccgcgcgca
tcctggaaaatggccgaggaagccgctcgcgaactggagtcggaaaccggctacagcaag
cgcgcagccgacgtgaagccgaagcaggaagcggcggtcaagggcatcacgcccgagcgc
ccggcaccgagcccggcaccgcagcgcccggtcgagccggttgcggcgcccgcgccggtc
gtcccggcaagcggcggcttcatcggctggttgaagggtctgttcggcatgtcgccggct
cctgcgcccgcgccggttgcgccggcacccgcgaaggaacaggctgcacgtccggtccgt
gagcggaccgagaagaccgagcagcgcggcggcgatcgcaaccgcaaccgtcgcggcagc
gcgcaacaggcgcagggcggccgcgatcaagccgcggcaagccgcgacaagccgcgccag
gaacgcgagggcaaggaagcacgcgagccgcgtgaaccccgcgagggtcgcgaaccgcgc
gaagcccgcgagccgcgcgaaaaccgtgaaggtcgtgaaggtcgtgagggccgcgaaggt
cgcgagggccgtggcccccgcgaaggccgcgaagcgcgcgagccgcgtgaaagccgtgaa
ccgcgcgaaaatcgcgaaccgcgcgagcgcaccgagcagccggaagccgtcgaagcagcc
ggacgcggcgaacgccaggaacgcggcgagcgtcgcgagcgcggtgagcgccgcaagcca
acgcaacatgcggctacgctcgagaccgtgacccgtggcgagaaccatccggaagccgac
gccgaacaggccgtcgcaaccgccctgccgggcgccgaagtcgctgccgacgcggaagcc
ggtgcacgtgacggcgaggaacgtcgtcgccgccgccgcggtcgtcgtggcggtcgtcgc
gagcgcgaagacgaaggcgcagtcgtcgagcatggcgccgacggtgaagccgccgtgcag
gccttgacgacggcagacccgagcgcgatcgagccagcccacacggccgcaccggccgcg
gtggcaactgtcgccgcagcaggcgccgcgattgccgaagccgcagtcgagcagcgcgcc
gaagcaccggcgccggcaccggctgcagtcgagccgcaatcggcaccggttcgcgtcgaa
gcgacgccggtcgcgccgattgcgccggtcgagcagcccgcgccggtcgcgccggcagcc
gaaccgaccccggtcgcaacggtcgcaacggtcgcaacggtcgcatcggccgccgcagcg
gaggcgggtccggctccggtcgaggtgtcgccgaccgacgcgttcgaagtgccggccacg
gaagtgccggccgcgccggttgccgtcgaagtgcagcagtccgcgcccgtcgagcaagct
gcaccggccccggtcgccgcggccgaaacggctccggcagctgtcgaaccggctcaggtt
gaagccgcaccggtgcaagccgctgtcgcaccggcactggcgtccgaccaatcggctgct
gccgccgctccgtcgagcctcgatgccgtgctgcaacaagcgggcctcgtgtgggtgaac
acggatgccgacaagcttcgcgccgcgcaggaagccgcgtcgcgcctgccgcgtccggtt
cgcgtgccgcgcgaacgcaaggcgctgccgccggtcgacccgaccccgatgcagcaggtc
gaaacgtcgcagcgttaa
DBGET
integrated database retrieval system
