Burkholderia latens: WK25_12970
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Entry
WK25_12970 CDS
T04819
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
blat
Burkholderia latens
Pathway
blat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WK25_12970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blat03019
]
WK25_12970
Enzymes [BR:
blat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WK25_12970
Messenger RNA biogenesis [BR:
blat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WK25_12970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
Sacchrp_dh_NADP
Cas3-like_C_2
DegT_DnrJ_EryC1
CMS1
CARD_2
Motif
Other DBs
NCBI-ProteinID:
AOK05300
LinkDB
All DBs
Position
1:2794320..2795765
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AA seq
481 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQPRGGGGSGGGNRQPRAGGSGQPAAK
RDGNAQPKAAKPAKPRAAAGTGGNATGGGRPSGAGNGARPANGNAAHANRNRSSRSGQRG
H
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgcttgtgaaggcggtcaacgagctcggc
tacacgtcgccgactcctatccagcagcaggcgatccccgccgtcctcggcggcggcgac
ctcctcgccggcgcacagaccggcacgggcaagaccgccggcttcacgctgccgatcctg
cagcgcctgcacacgttctacgccgagcaccgcggcgcgaagcgcgcggtgcgcgcgctg
attctcacgccgacgcgcgaactggccgctcaggtcgaggaaagcgtgcgtgcgtacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatcctcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccggctgctcgaccac
atgcagcaaaagacgatcgatctgtcggatctcgacatcctcgtgctcgacgaagcggac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
cagcgccagaatctgctgttctcggccacgttctccgacgaaatcaagtcgctcgccgac
agcctgctcgattcgccggcactgatcgaagtcgcacgccgcaacaccaccgcggaaagc
gtcgcgcagaagatccacccggtcgaccgcgatcgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggcttgccgagcagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcgcgcacgcgtgcgctcgcggaattcaagaacagcacgctgcaggtgctc
gtcgcaaccgacatcgccgcacgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgccggaagactacgtgcaccggatcggccgcacgggccgcgcg
ggcgcgaccggcgaagcggtgtcgctcgtgtgcgtcgacgagaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaagaagtgatcgcgggcttcgaaccggat
ccgaatgcgaaaccggagccgatccagcagcgtcgcggccagcagccgcgcggcggtggc
ggcagtggcggcggcaatcgccagccgcgtgcgggcggctcaggccagccggccgcgaag
cgcgatggcaatgcgcagccgaaggcggcgaagccggccaagccgcgcgcggccgccggc
acgggcggtaacgccaccggcggcggtcgcccgtccggcgccggcaacggcgcgcgtccc
gcgaacggcaatgccgcgcacgcgaaccgcaaccgttcgtcgcgcagcggccagcgcggt
cactga
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