Bifidobacterium longum subsp. longum BBMN68: BBMN68_1539
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Entry
BBMN68_1539 CDS
T01345
Symbol
cafA
Name
(GenBank) CafA
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
blb
Bifidobacterium longum subsp. longum BBMN68
Pathway
blb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBMN68_1539 (cafA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blb03019
]
BBMN68_1539 (cafA)
03009 Ribosome biogenesis [BR:
blb03009
]
BBMN68_1539 (cafA)
Enzymes [BR:
blb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBMN68_1539 (cafA)
Messenger RNA biogenesis [BR:
blb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBMN68_1539 (cafA)
Ribosome biogenesis [BR:
blb03009
]
Prokaryotic type
rRNA processing factors
BBMN68_1539 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RD3
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ADQ02570
LinkDB
All DBs
Position
1908039..1911107
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AA seq
1022 aa
AA seq
DB search
MQRAARSIVPTDNREGFVNDGTDNSTVSNADSAAAVNAAPAAASQPAEPVRRRRGGRRVV
RGTGAAGASLELQVQERAPLFEAPALPDAGTAADSKSADSSDSDESSDSQDSAERPTRRR
TRRAVSTVVDSDSEDDRPRRSRRTVSADDFDDDDAPRSRRRSVVDDDDYDEDRPVRRRSR
SRQSDDDDYEDRPVRSRSRRASMDMDDDDEDRPVRRRSRRAVADTHEDTPDERLFDAVES
LPSGHEAVRRGKPMTSLLFQEPVLPAAVDAHDTADTHDDDVDDDERPSRRSRRSRSHDDD
DAQPRSRRRDDRDDRGRNAADRDASRDVSRNAAAGDANASANADHDDFDSDDASDSRRSR
RSRRLNAQERRAAAEVEQIEEDLELDDIAYSPIAEEEGDEESDATRTRSRRRRRRGSRGE
TGANGEHDTAENDAEDTRSRRRDDRDDHDRDRDEDDEEQTVTRRRRRRRGGKNGEGTDDQ
SQNSEQPLVRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRE
NVDRLMVVREKEHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVD
IGQARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTL
AGRFLVLVPSGGMTGVSRKLSERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKDL
ESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIE
EYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEA
MTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRD
LVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQ
PTVSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTA
EE
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcgccgcgaggagcattgtgcccactgacaaccgtgaaggtttcgtcaacgac
ggaaccgataattcaaccgtatccaatgccgattcggctgcagccgtgaacgctgcgcct
gccgccgcctcccagcccgccgaacctgtccgccgtcgtcgtggcggccggcgcgtggtc
cgcggcactggtgctgccggcgcttctttggaactgcaagtgcaggaacgcgccccgctg
ttcgaagcccccgcgcttcccgatgccggcactgcggccgattccaagtcagccgattcc
agcgattccgatgaatccagcgattcccaggattccgccgaacgcccaacccgccgccgt
acgcgccgcgccgtttccacagtggtcgactcggatagcgaggatgatcgtcctcgtcgt
tcgcgccgcactgtcagtgccgatgatttcgatgacgatgacgccccacgttcccgccgc
cgttcggttgtggacgatgacgattacgacgaggaccgtccggttcgccgtcgttctcgc
tcccgccagtccgacgatgatgactacgaggatcggccggttcgctcccgctctcgccgt
gcgtctatggatatggatgatgatgacgaggaccgtccggttcgccgtcgttctcgccgt
gcagttgcggatacgcacgaggacaccccggatgagcgcctgttcgacgcggtcgaatcc
ctgccctctggccacgaggccgtgcgccgcggcaagccgatgacgtccctgctcttccag
gaaccggtactgcccgccgctgtggatgcgcacgataccgctgacactcatgatgacgat
gttgacgacgacgaacgtccgtcgcgtcgctcccgccgctcgcgcagccacgatgatgac
gacgcgcagccgcgcagccgccgccgtgacgaccgtgacgatcgtggccgcaatgccgcc
gaccgtgatgcgtctcgtgacgtttcccgcaacgctgccgccggtgacgccaatgccagc
gccaacgcggaccatgatgatttcgattccgatgacgcttccgactctcgccgttcccgt
cgctcccgccgcctgaacgcccaggagcgccgtgcagccgccgaagtcgagcagattgag
gaagacctcgagctggacgatatcgcctactcgccgattgccgaagaggagggcgacgaa
gaatccgacgccacccgcacccgttcgcgccgtcgccgccgtcgcggctcacgcggcgaa
accggtgccaacggcgagcacgataccgccgagaacgatgccgaagatacgcgttcccgc
cgtcgtgacgatcgcgatgatcatgaccgtgatcgcgatgaggacgatgaggagcagacc
gttactcgccgtcgccgtcgccgtcgtggcggcaagaacggcgagggcaccgacgaccag
agtcagaacagcgaacagccgctggtccgccgctcccgcaagcagcagtacatcgacgag
atcactgatgtggagggctccactcgtctcgaggccaagaagcagcgccgccgtgacaac
cgccgtgagcgcagccgccagagccagctcatggaacaggacttcctcgcacgccgcgag
aacgtggaccgcctgatggtggtgcgtgagaaggaacatcacacccagatttccgtggtg
gaagacaatgttctggtcgagcattacgtctccgacatccaggaagtacagaccgtcggc
aacatctaccttggccgcgtgcagaacgtgctgcccagcatggaggccgcatttgtggac
atcggccaggcccgcaacggcgtgctctacgccggcgaggtcaactgggatgccgctcgt
ctcgaaggccagccgcgccgtatcgagctggcgttcaagtccggcgacccggtgctcgtg
caggtcactaaggacccgatcggccacaagggtgcccgcctgacctctcaggtcacgctc
gccggccgcttcctggtgctcgtgccatccggcggcatgaccggcgtgagccgcaagctt
tcggagcgcgaacgcagccgtctgaagaacatcgtctccaagatcgccccgaaagacatg
ggcgtgattatccgtaccgcagccgagggcgcatccgaagacgccatcgtcaaggatctc
gaatcactggtccgccagtgggagcgcatcaacgccaagcgcgaggaattctggcacggc
aagcgcccgaagctcctgcagggcgagcccgacgtggccatccgcgtggtgcgcgacatc
ttcaacgacgacttcagcaagctcatcgtggaaggtgacaaggtctacgaccgtatcgag
gaataccttgacaccatggcccccgacttgaaggacaagctggagaagtgggacccggcc
gagcatgaaggcaaggacgtgttcgacaagtggtccatcgactcccagctgcgtaagggc
atggagcgtcaggtctacctgccgtccggcggctcgattgtcatcgatcgcaccgaagcc
atgaccaccattgacgtgaacaccggccgctttatcggcaagggcaagtccttggaagag
acggtgacgcgttgcaacctggaggcgtctgaagagatcgcccgccagctgcgcctgcgc
gatatcggtggcatggtgatgatcgactatgtggatatggtcatgcccgccaaccgcgat
ctggtgctgcgccgcttggtcgaatgcttggcacgcgaccgcaccaagcatcaggtggcc
gaagtcacctcgcttggtttggtgcagatgacccgcaagcgcatcggccagggtctggtc
gaggcgttctccgaggaatgcccgacctgcaagggccgtggtttcatcctgcatgatcag
ccgaccgtttcggccgactacgacgatccctacgcgcttcgcggtggcgacccgttcgtc
aaaaccaacaagcacggtcgcggcaccgctcccgctcccgaaccggctggttccagcgcc
gacgtcaaagccaaactggctcagattgccgccgctgccgtcgctgccaacaacacggcg
gaagagtaa
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