Bifidobacterium longum subsp. longum BBMN68: BBMN68_969
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Entry
BBMN68_969 CDS
T01345
Symbol
rpoC
Name
(GenBank) RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
blb
Bifidobacterium longum subsp. longum BBMN68
Pathway
blb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBMN68_969 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blb03021
]
BBMN68_969 (rpoC)
03400 DNA repair and recombination proteins [BR:
blb03400
]
BBMN68_969 (rpoC)
Enzymes [BR:
blb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBMN68_969 (rpoC)
Transcription machinery [BR:
blb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBMN68_969 (rpoC)
DNA repair and recombination proteins [BR:
blb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBMN68_969 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ADQ01922
LinkDB
All DBs
Position
complement(1132053..1136090)
Genome browser
AA seq
1345 aa
AA seq
DB search
MLDVNAFDKIRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNV
TPKDLERVIYFASYMVTEVNEDERHNDLPGLQDEFDSEIKRLEQRRDSDIEARAKKVEED
LAALEEAGEAKGPARTKLRNGAERDMAAIRTRYNDQIARVDAVFDKFKKLKPGDMVDDVD
LWREMQDRYGDYFDGCMGAEAIKKRLQSLDLETISKELREEIKDASEQRKTKALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DAEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVLEGVKGQG
RVFSSLEEAEMALDRHEIDMQAKVLIRLPESFVLPKNWEPGEVKVLDPREGEDEVVKEER
FHDGTVLFATSYGRILFNETLPTDYPFVNEQVAKGRLSKIVDDIAMRYSTQQVAATLDAL
KDLGFTRAPWSGVSFAFSDVNEPPERDEKIAEYEAKADKVNANYEMGLLTEEARRQELID
LWTECTAEVSKEVEEKFDPTSNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAG
LPIRVAERDNDGNLVLVKAADGGPYSRLLAADVIDPADGQTVLYKRDDALSMDVLNDLVA
HGVEEVKCRSVLTCESKRGVCAKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRS
FHSGGVAAASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADS
GAPKEDGVIKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIV
EEVHTVYRSQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDLLPGELVDNARFREINRNIVK
NGGRPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIG
KLIPAGTGLARYRNAVVEPDKAIRDTIYPNFGLGGDGDLGDASFSDADLSDLNFSNLEFG
DLKLGDDFNPDDFYSDQGGQPDIEE
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaagattcgcatcggccttgccaccgccgatgacatc
cgtggttggagccacggtgaggtcaagaagcctgaaaccatcaactaccgtacgctgaag
cctgagaaggacggtctgttcggcgaacagatcttcggcccgacccgtgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgatgcggcgtc
gaagtgacccgcagccgcgtgcgccgtgagcgcatgggccacatcgagctcgccgccccg
gtgacgcacatctggttcttcaagggtgtgccttcccgcctcggctacctgctgaacgtc
accccgaaggacctggagcgcgtgatttacttcgcctcctacatggtcaccgaggtgaac
gaagacgagcgtcacaacgatctgcccggcctgcaggacgagttcgattccgagatcaag
cgccttgagcagcgccgtgactccgacatcgaagcccgcgccaagaaggtcgaagaggat
ctcgccgcccttgaggaggccggcgaggccaagggcccggcccgcaccaagttgcgtaac
ggtgccgagcgtgatatggctgccatccgcacccgctacaacgaccagatcgcccgtgtg
gacgccgtcttcgacaagttcaagaagctcaagcccggcgacatggtcgacgacgtggac
ctgtggcgcgagatgcaggaccgctacggcgattacttcgacggctgcatgggcgccgaa
gccatcaagaagcgcctgcagtccctcgacctggagaccatctccaaggaactgcgcgag
gagatcaaggacgcttccgaacagcgtaagaccaaggccctgaagcgcctcaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctcgacgtgatcccggtc
atcccgccggacctgcgcccgatggtccagctcgacggtggccgcttcgccacctccgac
ctcaacgacctgtaccgccgtgtgatcaaccgtaacaaccgtctgaagcgactgatcgag
ctcggcgcccctgaaatcatgctcaacaacgagaagcgcatgctccaggaagccgtcgac
tccctgttcgacaacggccgtcgtggtcgcccggtcaccggtgcctccaaccgtccgctg
aagtccctgtccgacatgctcaagggtaagcagggtcgtttccgtcagaacctgctcggt
aagcgagtcgactactccggccgttccgtgatcgtggtcggcccgtccctgcgcatgcac
cagtgcggtctgccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgc
ctcgtggacctgaactatgcgcagaacatgaagtccgccaagcgtcttgtggaccgcggc
gacgccgaagtgtggggcgtgctcgaggaggtcatctccgagcaccccgtgctgctcaac
cgtgcacctacgctgcaccgtctgggtattcaggcattcgagccgatcctggtggaaggc
aaggccatccacctgccgccgctggcctgcgccgccttcaacgccgacttcgatggtgac
cagatggcagtccacctgccgctctccgccgaagcccaggccgaggcccgctcgctgatg
atggcttccgacaacatcctgaagccggccgacggccacaccgtgaccatgccgagccag
gatatgatcctcggtttgtactacctgtccaccgtgctggaaggcgtcaagggccagggc
cgcgtgttctcctcgctggaagaggccgaaatggccctcgaccgccacgagatcgacatg
caggccaaggtgctcatccgcctgcccgagagcttcgtgctgccgaagaactgggagccc
ggcgaagtcaaggtgctcgacccgcgcgaaggcgaggacgaggtcgtcaaggaagaacgc
ttccacgacggcaccgtgctgttcgccacctcctacggccgcatcctgttcaacgagacc
ctgccgaccgactacccgttcgtcaacgagcaggtggccaagggccgtctgtccaagatc
gtcgatgacatcgccatgcgttactccacccagcaggtggccgccacgctggatgccctg
aaggatctcggcttcacccgcgcaccgtggtccggcgtgtccttcgcgttctccgacgtg
aacgagccgcccgagcgcgacgagaagatcgccgagtacgaggccaaggccgacaaggtc
aacgccaactacgagatgggtctgttgaccgaggaagctcgccgtcaggaactcatcgac
ctgtggaccgagtgcaccgccgaagtgtccaaggaagtcgaggagaagttcgacccgacc
tccaacctggccatcatcgtgcagtctggtgcacgaggcaacatgatgcagatcaaccag
attgcaggtatgcgaggcctcgtggctaacccgaagggtgagatcattcctcgtcctgtg
aagtccaactaccgcgacggcctgtccgtgctggagtacttcatctcccagcacggtgca
cgtaagggtctggccgataccgcactgcgtaccgcagaatccggttacctgacccgtcgt
ctggtcgacgtctcccaggacgtcatcgtgcgcgaagaggactgcggcaccaaggccggt
ctgcccatccgcgtcgccgagcgcgacaacgacggcaacctggtgctcgtcaaggccgcc
gacggtggcccgtactcccgtctgctcgccgccgacgtcatcgacccggccgacggacag
accgtgctgtacaagcgcgacgacgccctgtccatggacgtgctcaacgacctcgtggcc
cacggcgtcgaggaagtcaagtgccgttccgtgctgacctgcgagtccaagcgcggcgtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtcgatgtcggcgagacc
gtcggtatcgtcgccgcccagtccatcggtgagcctggtacccagctgacgctgcgttcc
ttccactccggtggtgtggccgcggcctccgatatcacccagggtcttccccgtgtcacc
gagcttttcgaggcccgcaccccgaagggtgaggccccgatcaccgagttcgccggcagc
atcaagatcgtggagaacgatcgcggtcgccagatcatcctgaccccggacgccgattcc
ggcgcaccgaaggaagacggcgtgatcaagccgatcacctaccaggtctccaagcgcgtg
ccgctcaaggttgccgacggcgaccacatcaaggtcggcacccagctggtcgaaggttct
gtggaccccaagaagatcctcaccatcctcggcaagcgcgccgcccaggtcaacatcgtg
gaggaagtgcacaccgtgtaccgctcccagggtgtggatatccacgacaagcacatcgag
gtcatcgtgcaccagatgacccgtcgcgtgaccatcatcgactccggcgacaccgacctg
ctgccgggtgagctggtggacaacgcccgcttccgcgagatcaaccgcaacatcgtcaag
aacggtggccgtccggccgtcggtcgtccggcgcttatgggtatcaccaaggcgtcgctg
gccaccgactcctggctgtccgccgcatccttccaggagaccacccgcgtgctcaccgaa
gccgccctctccgagaaggtcgacgacctcaagggcctcaaggagaacgtcatcatcggt
aagctcatcccggccggtacgggcctcgcgcgctaccgcaacgccgtggtcgagcctgac
aaggccatccgcgacaccatctacccgaacttcggtctgggcggtgatggcgatctcggc
gacgcgagcttctccgacgccgacctgtctgacctgaacttctcgaacctcgagttcggc
gatctgaagctcggcgacgacttcaacccggatgatttctactccgatcagggcggtcag
cctgacatcgaggagtaa
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