Bacillus licheniformis DSM 13 = ATCC 14580: BLi00068
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Entry
BLi00068 CDS
T00200
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bld
Bacillus licheniformis DSM 13 = ATCC 14580
Pathway
bld03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLi00068 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bld03400
]
BLi00068 (mfd)
Enzymes [BR:
bld01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLi00068 (mfd)
DNA repair and recombination proteins [BR:
bld03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLi00068 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Zot
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AAU39048
UniProt:
Q65PG6
LinkDB
All DBs
Position
64977..68510
Genome browser
AA seq
1177 aa
AA seq
DB search
MNNIQSYITKSDDFKSIVNGLNEGLKEQLLAGLSGSARSLFTAALTKETRRPVFLITHNL
YQAQKITDDLTGLIKDQPVLLYPVNELISSEIAVASPELRSQRLDVLNRLASGETPIVVA
PAAAVRRMLPPVEVWQNSQIHIETGRDIDTEQLLQKLVQMGYERTDMVAAPGEFSIRGGI
IDVYSLTEENPVRIELFDTEVDSIRIFNTDDQRSLETRDEVTIGPAKELIVRDEDRQRAL
EQIDQGLANSLKKLKLDKQKEILDQNIAEDKERLKEGHIGQEMVKYLSYFYEKPASLLDY
FPKNTLLILDEISRIHEMEDQLQKEEAEWITSLLEEGKILHDTSMSFPFHSLISKQSRPI
LYYSLFLRHVQHTSPQNIVNVSSKQMQSFHGQMNVLKNEIERFKKSKYTTVFLGDSKERV
EKLASVLSDYDIEAAQADQDAALAQGQIYIMEGGLQSGFELPMIKLAVITEEELFKKRVK
KQARKQKLTNAERIKSYSELQIGDYVVHVNHGIGKYLGIETLEINGIHKDYLNIHYQGSD
KLYVPVDQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVESSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQREFEAAFPYQETEDQLRSIHEIKRDMEKERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVAILVPTTILAQQHYETILERFQDYPINIGLLSRFRTRKEANETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKAEEISMLVPDAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARKGDAPQAEKFE
PEIDLELDAYIPQTYVTDGKQKIDMYKRFRAISTIEEKSELQDEMIDRFGEYPKEVEYLF
AIAEAKVYAIKERVELIKQDKDAVRLTIDEKASAEIDGQKLFELGSKYGRQIGLGMEGKK
LKISIQVKNRKPEEWLETLLDILKGLQNVKKQTIASS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaatattcaatcctatataacaaaaagcgatgattttaaatccatcgtcaacggc
ttgaacgaagggctgaaggaacagctgcttgcggggctctccggatctgcccggtcgtta
tttacagccgctcttacaaaagaaacgagacggccggtatttttaattacgcataacctt
tatcaggctcaaaaaattacagatgatttaacagggctgataaaagatcagcctgtcctt
ttatatcctgtcaacgaattgatttcttctgaaatagcggtggcaagccctgagctgcgc
tcgcaaaggcttgatgtcttaaataggcttgcaagcggtgaaacgcctatcgttgttgct
ccggcagcagccgtcagaagaatgctgcctcctgtcgaagtatggcaaaacagtcagatt
cacattgagacggggcgcgacattgacacggaacagctgctccagaagctcgttcaaatg
gggtatgagcgtacagatatggtggcggcgccaggcgaattcagcatacgcgggggcatt
atcgatgtctactctttgactgaagaaaatcctgtccggattgaattgtttgatacagaa
gttgactcgattcgtatattcaatacggatgatcagcgctcactggaaacgcgcgatgaa
gtaacgatcggccctgcgaaggaactgatcgtgcgggatgaagacaggcaaagggcgctt
gaacaaatcgatcaaggccttgccaacagccttaaaaagctgaagctcgataaacaaaag
gaaattctcgaccaaaatatcgcggaagacaaagagcggctcaaggaagggcatatcggc
caggaaatggtcaaatacctttcttatttctatgagaagcctgctagtttactagattat
ttcccgaaaaataccttgcttatactagatgaaatcagccgtattcatgaaatggaagac
cagctgcaaaaggaagaggcagaatggattacgagcctgcttgaagaagggaaaatcctt
catgatacatcgatgtcatttccttttcacagcctcatttcaaaacagtcccgcccgatt
ttgtattactcgctgtttttaaggcatgtgcagcacaccagtccgcaaaacatcgtcaat
gtttcaagcaagcaaatgcagagctttcacggacaaatgaatgtgctcaaaaatgagatc
gaacggtttaaaaaatcgaaatatacgacggtttttctcggagacagcaaagagcgcgtc
gaaaaactagcatctgtactgtccgactatgacatcgaagccgcacaggccgaccaggat
gcagcgctcgcccaaggccagatttacattatggaaggcggtcttcaatccggttttgag
cttccgatgatcaagctggccgttatcacggaggaagagctgtttaaaaagcgtgtcaaa
aagcaggcgcgcaaacaaaaactgaccaatgccgaacggattaaaagctactcggagctt
cagatcggcgattatgtcgttcatgtaaaccacggtatcggaaagtatttagggattgaa
acgttggagatcaacggcattcataaggactacctgaatattcactaccagggaagcgac
aagctttacgtaccggttgaccaaattgatcaggtgcaaaaatacgtcggttccgaaggt
aaagagccgaagctttataaactcgggggaagcgaatggaaacgggttaagaaaaaggtt
gaaagctctgttcaggatatcgccgatgacttgatcaagctctatgccgaaagagaagca
agcaaaggctacgcgttttcacccgaccatgaaatgcagcgtgaatttgaagccgcattt
ccttatcaggagacagaggatcagctgagatcgatccatgagattaaaagagacatggaa
aaagaaagaccgatggaccggctcctttgcggcgatgtgggctacggcaaaaccgaagtg
gcgatccgcgccgcttttaaggcgattgcagacggaaaacaggtcgcgatccttgtgccg
actacgatcctagcacagcagcactatgaaacgatattggagcgctttcaggactacccg
attaatatcggtttgctcagccggttccggacgagaaaagaagcaaatgaaacgatcaag
ggcttgaaaaacggaacggtagacatcgtgatcggcactcacaggctgttgtccaaggat
gtcgtatacaaagatcttggtctgcttatcatcgatgaagaacaaaggttcggtgtcaca
cataaggaaaaaattaaacgcattaaagcgaatgtcgacgttttgacgttaacggcaact
ccgatacctcgaacccttcatatgtccatgcttggtgtcagagatttgtcagtcattgaa
acgcctccggaaaaccgcttcccggtacagacgtacgttgtcgaatacaacggggccttg
gtcagggaagcgatagaacgcgagctggccagaggcggtcaggtttacttcctgtacaac
cgggtggaggatattgaaagaaaagcagaagaaatctcgatgcttgtacctgacgccaag
gtgacgtacgcccatggaaagatgacagaaaacgaactcgaatcggtcatgctgaacttc
ttagagggagaatcggatgtactagtcagcacgacgattattgagacgggcgttgatatt
ccaaacgtcaatactttgatcgtatttgacgcagacaagatggggctttcccagctgtac
cagctgaggggccgcgtcggccgctcaaaccgtgtagcttacgcttattttacgtaccgg
aaggacaaagtcctaacggaagtggctgaaaaaaggcttcaggcgattaaagaatttaca
gaactcgggtcaggatttaaaatcgcgatgcgcgatttgacgatccgcggcgccggaaac
cttttaggtgcgcagcagcacgggttcatcgattctgtcggtttcgatttatattcgcaa
atgctcaaggaagcaatagaggcgcgcaagggagatgcaccgcaagctgaaaagtttgag
ccggaaatcgatttggagcttgacgcatatattccgcagacgtatgtgacagacggcaag
caaaaaatagatatgtataaacggtttagagcgatttcaaccattgaagaaaagagcgag
cttcaagacgagatgatcgaccgcttcggcgaatatccgaaagaagtagaatatttattc
gccatcgctgaggcgaaggtatatgccatcaaggaacgcgtcgagctgatcaaacaggat
aaagacgccgtcagactgacaattgacgaaaaagctagtgccgaaattgacggtcaaaaa
ctgtttgaactcggcagcaagtacggcagacagatcggccttggaatggaagggaagaaa
ttgaaaatctcgattcaagtgaaaaaccgaaaaccggaggaatggctggaaacgcttctc
gacatattgaagggccttcaaaacgttaaaaagcaaacgatcgcttcatcataa
DBGET
integrated database retrieval system
