Bacillus licheniformis DSM 13 = ATCC 14580: BLi00546
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Entry
BLi00546 CDS
T00200
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bld
Bacillus licheniformis DSM 13 = ATCC 14580
Pathway
bld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLi00546 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bld03019
]
BLi00546 (cshA)
03009 Ribosome biogenesis [BR:
bld03009
]
BLi00546 (cshA)
Enzymes [BR:
bld01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BLi00546 (cshA)
Messenger RNA biogenesis [BR:
bld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BLi00546 (cshA)
Ribosome biogenesis [BR:
bld03009
]
Prokaryotic type
rRNA helicases
BLi00546 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
MRP-L47
CMS1
Motif
Other DBs
NCBI-ProteinID:
AAU39502
UniProt:
Q65N62
LinkDB
All DBs
Position
552257..553720
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AA seq
487 aa
AA seq
DB search
MTITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIP
LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKK
NPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTL
LFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQS
PELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTT
KRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHDSVTVVAAAI
KMMTKEPDNTPVRLTEEAPLRTKRNKNHHHRSSKRRDGGGYRGKNNRSSYDKKRSSNDRR
QKKSYNS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
ttgacaataacgtttcaagattttcaattaagttctgatctcacaaaagcaatcaagcgt
atgggatttgaagaggcaacaccgattcaggcacaaacgattccactcggccttgcaaat
aaagatgtgatcggacaagcgcaaacgggaacaggaaaaacggctgcatttggcatcccc
cttgttgagaaaatcaaccccgagtctcctaacattcaagccattgttatcgcacctact
cgtgaactagccattcaagtttctgaagagctatataaaattggacaggataaacgcgct
cgcgtgctgccgatttacggaggacaggatatcggacgccagattcgcgcgcttaagaaa
aaccctcatattatcgtcggcacacctggtcgtctgcttgaccatatcaaccgccgcaca
atgcgtcttcaaacagtgaacaccgttgtgcttgatgaagcggatgaaatgctgaacatg
ggattcatcgaagatatcgaatccatcctttccaatgtgcctgctgaacaccagacattg
ctgttttctgcaacaatgcctgctccgattaagcggattgcagaacgtttcatgaccaac
ccggagcacgtaaaagtgaaagcaaaagaaatgacagtatcaaacatccagcagttctac
ctagaagttcatgaacgcaaaaagtttgatacgctgacacgccttcttgacatccagtct
ccggaattggcgatcgtattcggccggacaaagcgccgtgtcgatgaactgacagaagcg
cttaatctgcgcgggtatacagctgaaggaattcacggagatttgacccaggcgaagcgg
atggttgcactccggaaatttaagcaaggcgcgattgaagtgctcgttgcgacagacgtt
gcggctcgcggccttgatatttcaggtgtaacgcacgtctacaacttcgatgtgccgcaa
gatcctgagagctatgttcaccgcatcggaagaacgggacgcgcgggcaaaacaggaatg
gcgatgaccttcattacaccgcgtgaaaaggatatgctgcgcgccatcgagcagacgaca
aaacgcaaaatggaccgcatgaaagcaccgactctcgatgaggccattgaaggacagcag
caggtgacggttgaccgcatccggacgatcatcgaggaaaataacctgaacttctatatg
acggctgcagcggaattattggaagaccatgattctgtgacagttgttgcggctgccatt
aaaatgatgactaaagagccggacaacacacctgtccgtttgacggaagaggctccgctc
agaacgaagcgaaacaaaaatcaccaccaccgttcatcaaaacgcagagacggcggcggc
tacagaggaaagaacaatcgttcatcttatgataaaaagcgttcttcgaatgacagacgc
caaaaaaaatcatataattcataa
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