Bifidobacterium lemurum: BL8807_00350
Help
Entry
BL8807_00350 CDS
T06861
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
blem
Bifidobacterium lemurum
Brite
KEGG Orthology (KO) [BR:
blem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blem03019
]
BL8807_00350 (hrpA)
Enzymes [BR:
blem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BL8807_00350 (hrpA)
Messenger RNA biogenesis [BR:
blem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BL8807_00350 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_22
AAA_19
SLFN-g3_helicase
T2SSE
HA2_C
AAA_30
nSTAND3
NACHT
Zeta_toxin
AAA_11
ResIII
Cas3-like_C_2
AAA_16
SRP54
Motif
Other DBs
NCBI-ProteinID:
QOL34428
LinkDB
All DBs
Position
79659..83723
Genome browser
AA seq
1354 aa
AA seq
DB search
MKYEYPSELPVSAARGEIAEAVRSSQVVIVSGQTGSGKTTQLPKILLELGRGAHGRQIVH
TQPRRIAARTVAERIASEMGVRLGDEIGYQVRFTDESSPNTRLRVVTDGILLAQIQRDPK
LMKYDTIVIDEAHERSLNIDFLLGYLTALLPQRRDLKLVITSATIDSVKFQEHFERALGT
AVPVIEVSGRTYPVRIAYEPLGAAPALMHEVPGFATGARPGDDDLDAGITDMPTAVARAC
AELIIHSSHERGARDILVFASGERDIHEFEAALRHHYGPRAADMRRPDAIEIMPLFARLS
AKEQHRVFEPHTHQRIVIATNVAETSLTVPGIRYVVDPGMARISRYSKTAKVQRLPIEPI
SQASADQRSGRCGRIADGIAIRLYAREDYETRPRFTEPEILRTSLGAVVLHMLSVGVART
AEDVTNFGFIDPPDMKAVSDGFNELTELKAIGRKRGEVTLTHIGRQLARIPIDVRLGRMV
IEAAKSTSPNTLAAMLVVVAFLSLQDPRERPDEARDEADRIHNRYADPTSDFLTALNIWD
RVFQADGEPSNNALRRICKAEYLNWLRMRQWKDLVSQLREMCREMKFKVGEPLPSSRAGL
EIRQLPINQQAAHSLCCAWDAEGIHRSMLAGLLSMMGMQVVREPKASDFAGLSGAARARA
MKRAQKQSKNDYQGARGTHFALFPASAVAKATPAWVMSTELVETSRLWARYSAAIDPAWA
EPLAGSLTRTTYAEPHWSGSRGSAVATSKVLLYGLPIVQDRTVQWGRINPLEARDFLIRQ
GLVEGDIQQRFSYDEFVAKNRDVLEEAAEDASRTRQIADTVSDEDLYDFYNAVIPHEVTC
VADLAKWWKVEHDEHPTLLDFDPAKVERLADSESVSLDDYPDHWHTLGSDGRPIDLRLSY
VYDPHDPHDGVTVHVPIKALSRVSPEQFTWNVPGLLDELLLAMIKSLPKQLRVQFVPAPD
TAAKLRDWIDEHYPDLPGSGSQGKPNLPPLPADGEAARWPDFAHVFTQAAIQVVGAQIHP
EVLTGELWDKLAPYLRMTFSVEQTLPPSRNQRGRRRARGPVKVMGVSKDLVALQREFAAQ
AEASARQMVQRQAEQAATQGKLVEQANLLHKAGATTESRAAMLWKGALDALRLPADRVSS
RWLGGEALMLASAPYQSTKALVEDLQLAAVKRLLPEVDKLPDDEALANAVLDVQQVYEDT
VYAVAHDVIAILTRYAEVDKAVSGKADLPMLSVLQSIREHIATLVFPGFIGAAPPYSLRH
IERYLRADLARLTKAKTDKNRDVRWAWEADEAKQLVDKALDRAKREPAGPRHEALTKQAD
EARWMLEEFYVSLWAQELGTPKPISIQRLRKALA
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgagtatccatctgaactgccggtgtcggccgcacgcggcgagatcgccgag
gccgtgcgttccagccaggtggtgatcgtctccggacagacgggctccggcaaaaccacg
cagctgccgaagattctgctcgagcttggccgcggcgcgcatggacggcagatcgtgcat
acgcagccgcgccgtatcgccgcacgcacggtggcggagcgcatcgccagcgagatgggc
gtgcgtctgggcgacgagatcggctatcaggtgcggttcaccgacgaaagctcgccgaac
acgcggcttcgcgtggtcaccgacggtattctgctcgcgcagatccaacgcgaccccaag
ctgatgaaatacgacacgatcgtgatcgacgaggcgcacgaacgcagtctcaacatcgac
tttctgctcggctatctgaccgctctgctcccccagcgccgcgacctgaaactggtgatc
acctccgccaccatcgattcggtgaagttccaggagcatttcgaacgcgctttgggcacg
gcggtgccggtgatcgaagtgtcggggcgcacctatccggtgcggatcgcctacgagccg
ctcggcgccgcgcccgcgctgatgcatgaggtgccgggtttcgccaccggcgcgcgtccc
ggcgacgacgacctcgacgcgggcatcaccgatatgcccaccgccgtggcccgcgcatgc
gccgagctcatcatccattcgagccatgagcgcggcgcacgcgatattctcgtgttcgcg
tccggcgagcgcgacatccacgagttcgaggccgcgctgcggcaccattacggtccgcgc
gcggcggatatgcgccgccccgacgcgatcgagatcatgccgctgttcgcgaggctgtcc
gccaaggagcagcatcgcgtgttcgagccgcatacgcatcagcgcatcgtcatcgccacg
aatgtggcggagacgtcgctgaccgtgccgggcatccgctatgtggtcgatccgggcatg
gcgcgcatctcacgctattcgaagacggcgaaggtgcagcgtctgccgatcgagccgatc
agccaggcgagcgccgaccagcgttccggccgatgcggccgtatcgccgacggcatcgcc
atccgcctgtacgcgcgtgaggattacgagacgcgcccgcgcttcaccgagccggagatc
ctgcgcacctcactgggcgcggtggtgctgcatatgctgtcggtgggcgtggcgcgcacg
gccgaggatgtgacgaatttcggcttcatcgacccaccggatatgaaggccgtctccgac
ggtttcaacgagctgaccgagttgaaggccatcggccgcaagcgcggcgaggtgacgctc
acgcatatcggacgccagctggcgcgcattccgatcgacgtgcgtttgggccgtatggtg
atcgaggcggcgaagtccacgtcgccgaacacgctggccgccatgctggtggtcgtggcg
ttcctgagcctgcaggatccgcgcgaacgcccggacgaggcgcgcgacgaggcggaccgc
atccacaaccgctacgccgatccgaccagtgatttcctcaccgcgttgaatatctgggac
cgcgtgttccaggcggatggcgagccgagcaacaacgcgctacgccggatctgcaaagcc
gagtatctcaactggctgcgtatgcgccagtggaaggatctggtctcgcagctgcgtgag
atgtgccgcgagatgaagttcaaggtgggtgagccgcttccctcctcgcgcgccggactg
gagatccgccaactgccgatcaaccagcaggccgcacattccctgtgctgcgcgtgggac
gccgaaggcatccacaggtcgatgctggcggggcttctttccatgatgggcatgcaggtg
gtgcgagagcccaaggcctccgatttcgcggggctttccggcgcggctcgggcgcgtgcc
atgaagcgcgcgcagaagcagtcgaagaacgattatcagggcgcgcgcggcacgcatttc
gccctcttccccgcctccgcggtggccaaggccacgccggcttgggtgatgagcacggag
ctggtggagacgagccgcctgtgggcgcgctattccgccgcgatcgacccggcgtgggcc
gaaccgttggcgggctcgctcacccgcaccacctacgccgaaccgcattggtcgggttcg
cgcggttcggcggtggccacgtcaaaagtgctgctgtatggcctgccgatcgtgcaggac
cgcaccgtgcagtggggccgcatcaacccgttggaggcgcgagacttcctgatccgccaa
ggtctggtcgaaggcgacatccagcagcgcttcagctatgacgagttcgtggcgaagaac
cgcgacgtgcttgaggaggcggccgaggacgcgagccgcacgcgccagatcgccgacacg
gtctccgacgaggatctgtacgatttctacaacgcggtgatcccccacgaggtgacctgc
gtggccgatttggcgaaatggtggaaggtcgaacacgatgagcatcccaccttgttggat
ttcgatccggcgaaggtggaacgtctggccgacagcgagtcggtgagtctcgacgactat
cccgaccattggcataccttgggttccgacggccgccccatcgatttgcggctcagctac
gtgtatgacccgcacgatccgcacgacggcgtgaccgtgcatgtgccaatcaaggcgctt
tcgcgcgtctcccccgaacagttcacatggaacgtgccgggcctgttggacgagctactg
ctcgccatgatcaaatccctgcccaagcagctgcgcgtgcagttcgtgcccgctccggac
acggccgccaaactgcgcgactggatcgacgaacactaccccgacctgcccggctccggc
tcgcagggcaagccgaatctgccacccctgccggccgacggagaggccgcgcgttggcct
gatttcgcgcatgtgttcacacaggccgccatccaggtggtcggcgcgcagatccatccg
gaggtgctgaccggcgaattatgggacaagctcgccccgtatctgcgtatgacgttctcg
gtggagcagacgttgccgcccagccgcaaccagcgcggccgccgtcgcgcgcgcgggccg
gtgaaggtgatgggtgtatccaaggatctggtcgccctgcaacgcgagttcgccgcgcag
gccgaagcgtcggcccgtcagatggtccagcgtcaggccgagcaggcggccactcaaggc
aagctggtcgagcaggcgaatctgctgcacaaggcgggcgcgaccaccgagtcgcgcgcc
gcgatgctttggaagggcgcgcttgacgcgctgcggctgccggccgaccgcgtctcctcg
cgctggctgggcggcgaggcgctgatgctcgcctccgcgccgtaccagtccaccaaggcg
ctggtggaggatttgcagttggccgcggtcaagcgtcttctgcccgaggtggacaaactg
cccgacgatgaggcgttggcgaacgccgtgctcgacgtgcagcaggtgtatgaggacacc
gtgtacgcggtggcgcatgacgtgatcgcgattctgacccgctacgccgaggtcgacaag
gcggtgtccggcaaggctgacctgccgatgctctcggtgttgcagtcgattcgcgagcat
atcgccacgctggtgttccccggcttcatcggtgccgctcccccgtattcgctgcgccat
atcgagcggtatttgagggccgacctcgcgcgcctgaccaaggcgaaaaccgataagaac
cgcgacgtgcgctgggcatgggaggccgacgaagccaaacaactcgtggacaaggccttg
gaccgcgccaagcgcgaaccggccgggcctcgccacgaggcgctgaccaagcaggccgac
gaagcccgctggatgctcgaggagttctatgtctccctctgggcgcaggagctcggcacc
cccaaacccatcagcatccaacgcctgcgcaaagccttggcctga
DBGET
integrated database retrieval system
