Bifidobacterium lemurum: BL8807_01650
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Entry
BL8807_01650 CDS
T06861
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
blem
Bifidobacterium lemurum
Pathway
blem03420
Nucleotide excision repair
blem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BL8807_01650
03430 Mismatch repair
BL8807_01650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blem03400
]
BL8807_01650
Enzymes [BR:
blem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BL8807_01650
DNA repair and recombination proteins [BR:
blem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BL8807_01650
MMR (mismatch excision repair)
Other MMR factors
BL8807_01650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
QOL34662
LinkDB
All DBs
Position
complement(406690..410790)
Genome browser
AA seq
1366 aa
AA seq
DB search
MTGFTPSAEQSAIIDAPVDSDVLVVAGAGSGKTFTMTQRIIALIRRGVAPERILGLTFTR
KAAGELLERVSAAVSGEHASADGQADAGSMDHAFLKPAIFTYDAFFQTLVRQYGLLVGFD
QNTQPLSEAGRHQLVSDVIDAHMGSALERNLGAFDTLADNVLKLSESISSAMIGSDCTNF
EEAVDRVRAWDQAFMARLERVIGDEPLPEPMPVKPVRGKKDTDEEWRTKVDAFMESDLHP
FCVGQCGRLYETTQKREALLTLVEEYAKAKRMRNMAEFSDFTIAAYQLIERFPSIAQRCR
RRYSHVLLDEYQDTSTTQAALLASLFHADDHDRCAVNAVGDPFQSIYAWRGASPGAFRMF
QSAFGMPSDAKPYPLSVTRRNPRLVLEAANNLTEPLRVKPDRASSSLMREVDVAPLDPLD
DADAGTLGVLGFETHGQEIDAVVRFCKAAVARQHKRGNRESASVAVLFRTKTIMPEYQEA
LENAGLRTFTVGYSALLERPEILDVFALLHVVSNHTDSAALMRLLATPRFNVAAGDLASL
ARFAEQANTEQRFHALVQAGLVSADIPKHEWADAVRDYRDKVANAVFLADLLIDGELASL
LDKCDSISEQGAAAITRASTMLKHVQDAIGRPIHDVVRAAVEALELDIDTVIAHALRQPD
HRPDPTLSRLPMESIIDLVDTYAQEIAVDQTPTLRGFTAWVDRLKSIDDESASLPTGPVD
VELMTVHQSKGLEWDAVVVVGMSDGGFPSGQGDGLKVSLAERQTENPGSGRWSAPRYDEK
ANTWLTNPTAVPVPVRADADILPRFPHDLAVGADPIEGLDALDDAETIDDEVFGSIREFV
DERDGANADGWYLTQMEEYGRRLHADERRLAYVALTRAREDVLLTYAHYNEGSRDPSAVG
GRARKKSPSNFWSEVHDSIHRHHDVLWAKDLVVDPVEDFADAQAPEGFFVGDRAREYGEA
VVTEAWRSPIEPSAQAEDMPWPARLSDSKHEEITRGVSELREAIRARRDGPASEASMGRR
HGEGSLTERARMLVSDPDLMANLLDGAAFDQAVKAKALRIGAAGRQNVTGLQARAGGMGE
REEREYWRGIIRPIPRVASPAAEAGTRLHDWAERFVNAGLPGAGEALAYGSGIGGFGTGD
ASVGVSGVIGAGSTDGGESREALIAEAARDPNEKIRVWAERLAASRWARRTPAWAERQIV
VDIPGVGIVNGKLDAVFYGRLDDDGENAGAENVTAGNTGAGNNGAGNDATGATAASSDVP
VSVATAASVASVVSGEATSPTYTVVDWKTGKRPTNPEEIERKLAQLDMYRLLLAAVEGIE
LDSIDASLYYVSEPDEGRRELRARAKTEQDILAELSSGIPEQSDND
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaccggattcacgccaagcgctgagcaaagcgccatcattgacgcgcctgtcgactcg
gacgtgctggtcgtcgccggcgcgggtagcggcaaaaccttcaccatgacccagcgcatc
atcgcgttgattcggcggggcgtcgccccggaacgcattctcggcctgaccttcacgcgc
aaggccgccggcgaattgctggaacgcgtgtccgccgccgtatccggagagcatgcgtca
gcggatggccaggcggatgcgggctcgatggaccatgccttcctgaaaccggcgattttc
acctacgacgcctttttccaaaccttggtgcggcaatacggtctgctggtgggcttcgac
cagaacacgcagccgttgagcgaggcgggcagacatcagctggtcagcgacgtgatcgat
gcgcatatgggaagcgcgctcgaacggaacctcggcgcattcgacaccttggccgacaat
gtgctcaaactttcggaatccatctccagcgccatgatcggttcggactgcaccaacttc
gaagaagcggtggaccgcgtgcgcgcatgggatcaggcgtttatggcaaggctcgaacgg
gtgatcggtgacgaacctctgccggagccgatgccggtcaagcccgtacgtggcaaaaaa
gacacggacgaggagtggcggaccaaagtcgatgcgttcatggagagcgatctccatccg
ttctgcgtggggcaatgcgggcgactgtatgagaccacgcagaaacgtgaggcgttgctc
actctggtggaggagtacgcgaaagccaagcgtatgcggaatatggcggaattctcggat
ttcaccatcgcggcctatcagctcatcgaacgctttccctccatcgcgcaacgatgccga
cgtcgatacagccacgtgctgctggacgaatatcaggacacctccaccacacaggccgcg
ctgctcgcctcgctgtttcacgcggatgaccatgaccgttgcgcggtcaacgccgtggga
gaccccttccaatccatctacgcatggagaggggcgagtccgggcgcgttccgtatgttc
caaagcgctttcggcatgccgtccgacgccaagccatatcctctaagcgtcaccagacgt
aatccacggttggtgttggaggccgccaacaatctcaccgagcctttgcgcgtcaagccc
gatcgtgcgagcagttcgctgatgcgcgaggtggacgtcgcaccgctcgatccgcttgac
gatgccgacgcgggcacccttggagtgcttgggtttgagacgcacggacaggagatcgac
gccgtggtgcgcttctgcaaggccgcggtcgcacgccagcataagcgggggaatcgggaa
tcggcttcggtggcggtgctgttccgaacgaaaacaatcatgcccgaatatcaggaggct
ttggaaaacgcgggattgcgcacttttacggtggggtactccgcgctgctcgaacgtccg
gagatccttgatgtgttcgccttgctgcatgtcgtatccaaccacacggacagcgcggcg
ctgatgcgcctgctggccacgccgcgattcaacgtcgcggccggagacctcgcctcatta
gcccgattcgcggaacaagccaacaccgagcagcggttccacgcattggtgcaggcggga
ctggtctccgcggacatacccaaacacgagtgggcggatgcggtgcgcgactaccgtgac
aaagtcgccaacgcggtgttcctcgcggacctgctgatcgatggcgaactcgcatcgttg
ctggacaagtgcgattcgatcagcgaacagggggctgcggcgatcacccgcgcctcgacg
atgctcaagcatgtgcaggacgccatcggccggccgattcacgatgtggtacgcgccgcg
gtggaagcgctggaattggatatcgacaccgtgatcgcccatgcgctgcggcagcccgac
caccggcccgatcccacactgtcccgcctgccgatggagtcgatcatcgacctggtggat
acctacgcgcaggagatcgccgtggaccagactccgacgttgcgtggttttacggcatgg
gtcgaccggctcaaatcgatcgatgacgaaagcgcgtccctgccgaccgggccggtcgac
gtggaactgatgaccgtgcaccaatccaagggattggaatgggacgccgtggtcgtggtc
ggcatgtccgatggcggattccccagcggtcaaggggatggtctcaaggtctctcttgcc
gaacggcagacggaaaaccccggcagcggacgatggtcggcgcctcgttacgacgagaag
gccaacacatggctgacgaatcccaccgcggttccggtcccggtgcgtgccgatgccgat
attctgcctcgattcccgcatgatctggccgttggtgccgatcccatcgaaggattggac
gcgctcgacgatgcggagaccatcgacgatgaggtgttcggctccatacgtgagttcgtc
gatgagcgtgacggagcgaacgccgacggctggtatctgacccagatggaggaatacggg
cggcgtttgcacgccgatgagcgacggttggcctatgtggcgctcacgcgcgcccgcgag
gacgtgctgctcacctacgcgcattacaacgaaggctcccgcgatccctccgcggtggga
ggaagggctcggaaaaagagcccatccaacttctggtcggaggttcatgactccatacac
cggcatcatgacgtgctttgggcgaaggatctcgtggtggatcccgtcgaggactttgcg
gatgcgcaggctcccgaaggcttctttgtcggcgaccgtgcccgcgaatacggcgaagcc
gtcgtcaccgaagcgtggaggtctccgatcgaaccgtccgcccaagcggaggacatgcca
tggccggccagattgagcgactccaaacatgaggagatcacccgcggcgtgtctgaactg
cgcgaagccattcgcgcacggcgtgatggcccggcgagtgaagcgagcatggggaggcgg
catggagaaggctcgctgacggagcgtgcgcgcatgttggtctccgaccccgatctgatg
gccaatctgctcgacggcgcggctttcgaccaggcggtcaaggccaaggctttgcgtatc
ggtgcggccggtcgccagaacgtcactggcctgcaggcgcgtgccggaggcatgggcgaa
cgtgaggagcgcgagtattggcgcggcatcatccgtccgattccacgtgttgcctcgccc
gccgccgaagcgggcacgcgattgcatgattgggcggagcgtttcgtgaacgcgggtctg
cccggtgccggcgaggcgctcgcctacggctccggcatcggtggcttcggaaccggtgac
gcaagcgtcggtgtttccggtgtgatcggtgccggttcgacggatggtggcgaatcccgc
gaagcattgatcgccgaagccgcgcgggaccccaacgagaaaatccgcgtatgggccgaa
cgcttggccgcgtcgcgttgggcgcgccgcacgccggcttgggcggagcggcagatcgtc
gtggacattcccggcgtcggcatcgtcaacggcaaactcgacgccgtgttttacggccgt
ttggacgatgacggggagaacgccggcgcggagaacgtcaccgcggggaacaccggcgcg
gggaacaacggcgctgggaatgacgccacgggggctacggcggcatcgtcggacgttccg
gtctccgtcgccaccgccgcatccgtcgcatccgtcgtctccggcgaggcgacgtctccc
acctacacggtggtcgactggaaaaccggcaaacgccctaccaatccggaggagatcgaa
cgtaaactcgcccagctggacatgtaccgtcttctgctcgccgccgtcgaaggcatcgag
ttggacagtatcgacgcgtctctctactatgtgagtgagcccgatgagggccggcgcgag
ctgcgtgcccgcgcgaaaacagaacaggacatccttgccgagttgagctccggcatcccc
gagcaatcggacaacgactag
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