Bifidobacterium lemurum: BL8807_01685
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Entry
BL8807_01685 CDS
T06861
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
blem
Bifidobacterium lemurum
Pathway
blem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BL8807_01685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blem03021
]
BL8807_01685
03400 DNA repair and recombination proteins [BR:
blem03400
]
BL8807_01685
Enzymes [BR:
blem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BL8807_01685
Transcription machinery [BR:
blem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BL8807_01685
DNA repair and recombination proteins [BR:
blem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BL8807_01685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Pentapeptide
Pentapeptide_3
Motif
Other DBs
NCBI-ProteinID:
QOL34667
LinkDB
All DBs
Position
complement(427927..431979)
Genome browser
AA seq
1350 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNV
TPKDLERVIYFASYMVTEVDDEQRHTDLPGLQDEFDTEIKQLERRRDNEIEERAKKVESD
LAELEAAGEAKGPARAKLRNSAEREMAAIRQRFNDQISRLDAVFDKFKKLAPGDMIDDVD
LWREMQDRYGDYFDGCMGAEAIKKRLQSLDLEAISMELKEEIKDASEQRKTKALKRLKVV
NAFLTTGNKPEAMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DSEVWGVLEEVIAEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMSSDNILKPADGHTVTMPSQDMILGLYYLSTVVEGAKGQG
RVFSSLDEAEMSLDLHEIDMQAKVLIRLPQDFTLPTDWEPGEVQVVDPQPGSAEVVKEER
FHDGTVLFATSFGRILFNETLPTDYPFVNDQVAKGRLSNIVDDIAMRYSTQQVAATLDAL
KDLGFTRAPWSGVTMSFSDIATPPEGDAIIADYEQQAAKVNDQFDMGLLTAEDRREELIS
LWTECTDKVAEAMRDNFHDANNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYREGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAG
LMLRVADRDADGNLTLVKAADGGPYSRLLAADVIDPADGETVLFKRDDALSMDALNTLVE
HGIEEVKCRSVLTCESKRGVCSKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPITEFAGTIKVTENDRGRQIVLTPDADS
GAPTEDGVIKPITYQVSRRVPMLVKDGEHVKTGTQLVEGSVDPKKILTILGKRAAQVNIV
EEVHNVYRSQGVDIHDKHIEVIVHQMTRRITIIDSGDTDLLPGELVDNARFRATNMATVK
NGGKPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIG
KLIPAGTGLARYRNAVVEPDKAIRDTIYPNFGLGGDMEAGADFSDADLSDVDFSNIDFGD
LKLGDDFNPDDFLNDAGGQVDLGGDLGDVL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
gtgctggatgtcaacgcttttgacaaactgaggattggtctcgccaccgccgacgatatt
cgcggttggagccacggcgaggtcaagaagcccgaaaccatcaactaccgtaccctcaag
cccgagaaggacggtctgttcggcgagcagatcttcggcccgacccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgcgagcgatgcggcgtc
gaggtgaccaagagccgcgtgcgccgcgagcgcatgggccatatcgaactggccgctccg
gtgacgcatatctggttcttcaagggtgtgccgtcgcgtctgggctacctgctcaacgtg
accccgaaggatctggagcgcgtgatctacttcgcctcctacatggtcaccgaggtcgac
gatgagcagcgccacacggatctgcccggtctgcaggacgagttcgacaccgagatcaag
cagctggaacgccgccgcgacaacgagatcgaggagcgcgccaagaaggtcgaatccgat
ctggccgagctcgaggccgccggcgaggccaagggacccgcccgcgccaagctgcgcaac
agcgccgagcgcgagatggccgccatccgccagcgtttcaacgaccagatctcccgtctg
gacgccgtgttcgacaagttcaagaagcttgcccccggcgacatgatcgacgatgtggat
ctgtggcgtgagatgcaggaccgctacggcgactacttcgacggctgcatgggcgccgag
gcgatcaagaagcgtctgcagtccctcgatcttgaggccatctccatggagctgaaggaa
gagatcaaggacgcctccgagcagcgcaagaccaaggccctgaagcgtctcaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctcgacgcgattccggtc
atcccgccggatctgcggcctatggtgcagctcgacggcggccgcttcgcgacctccgat
ctgaacgacctctaccgtcgtgtgatcaaccgcaacaaccgtttgaagcgcctcatcgag
ctcggcgccccggagatcatgctcaacaacgagaagcgcatgctccaggaggccgtcgac
tcgctgttcgacaacggccgccgtggacgcccggtcaccggcgcctcgaaccgtccgctc
aagtccctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctcggc
aagcgcgtggactactccggccgttccgtgatcgtggtgggcccgtccctgcgcatgcac
cagtgcggtctgcccaagccgatggcgctcgagctgttcaagcccttcgtcatcaagcgt
ctggtggacctcaactacgcgcagaacatgaagagcgccaagcgtctggtcgaccgcggc
gattccgaggtgtggggcgtgctcgaagaggtcatcgccgagcatcccgtgctgctcaac
cgcgcgcccacgctgcaccgtctgggcatccaggccttcgagccgattctggtcgaaggc
aaggccatccacctgccgccgctcgcctgcgccgccttcaacgccgacttcgacggcgac
cagatggccgtgcacctgccgctgagcgccgaagcccaggccgaggcccgctcgctgatg
atgtcgtccgacaacatcctcaagcccgccgacggccacaccgtgaccatgccttcgcag
gatatgatcctcggtctgtactacctgtccaccgtggtggagggcgccaagggccagggc
cgcgtgttctcctcgctggacgaggccgagatgtcgctcgacctgcacgagatcgacatg
caggccaaggtgctgatccgcctgccgcaggacttcaccctgcccaccgattgggagccg
ggcgaggtgcaggtcgtcgacccgcagccgggcagcgccgaggtcgtcaaggaagagcgc
ttccacgacggcaccgtgctgttcgccacctccttcggccgcatcctgttcaacgagacc
ctgccgacggactacccgttcgtcaacgaccaggtcgccaagggccgtctgtcgaacatc
gtcgacgacatcgccatgcgctactccacccagcaggtggccgccacgctcgacgccctg
aaggatctcggcttcacccgcgccccgtggtccggcgtgaccatgtccttctccgacatc
gccaccccgccggaaggcgacgcgatcatcgccgactacgagcagcaggccgccaaggtc
aacgaccagttcgacatgggtctgctcaccgcggaggaccgccgcgaggagctcatcagc
ctgtggaccgagtgcaccgacaaagtggccgaggccatgcgcgacaacttccacgacgcc
aacaacgtgaacatcatggtgcagtcgggagcgcgaggcaactggatgcagatccgccag
atcgcgggtatgcgaggcctcgtggccaacccgaagggcgagatcatcccccgtccggtc
aagtccaactaccgcgagggcctgtccgtgctggagtacttcatctcgcagcacggcgcc
cgcaagggtctggccgataccgcactgcgtaccgccgagtcgggctacctgacccgtcgt
ctggtcgacgtctcccaggacgtgatcgtgcgcgaagaggactgcggcaccaaggccgga
ctcatgctgcgcgtggccgaccgcgacgccgacggcaacctgacgctggtcaaggccgcc
gacggtggcccgtactcccgcctgctcgcggccgacgtgatcgacccggccgacggcgag
accgtgctgttcaagcgcgacgacgccctgtcgatggacgcgctcaacacgctggtcgag
catggcatcgaagaggtcaagtgccgttccgtgctcacctgcgagtccaagcgcggcgtg
tgctccaagtgctacggttggtcgctggccaccaacaagctggtcgacgtcggcgaaacc
gtcggtatcgtcgccgcccagtccatcggcgagcccggtacccagctgacgctgcgctcc
ttccactccggcggcgtcgcctcggcctccgatatcacgcagggtcttccccgtgtcacc
gagttgttcgaggcccgcaccccgaagggtgaggcgccgatcaccgagttcgccggcacc
atcaaggtcaccgagaacgaccgcggccgccagatcgtcctcactccggacgccgactcc
ggcgctccgaccgaggacggcgtgatcaagccgatcacgtatcaggtgtcccgccgcgtg
ccgatgcttgtcaaggacggcgaacacgtcaagaccggcacccagctggtcgaaggctcc
gtcgatccgaagaagatccttacgatcctcggcaagcgcgccgcccaggtgaacatcgtg
gaggaggtgcacaacgtgtaccgctcccagggtgtggatatccacgacaagcacatcgag
gtcatcgtgcatcagatgacccgccgcatcaccatcatcgactccggcgacaccgatctg
ctgcccggcgagttggtggacaacgcccgcttccgcgccaccaacatggcgaccgtgaag
aacggcggcaagcccgccgtcggccgtcctgcgctgatgggcatcaccaaggcctcgctg
gccaccgattcgtggctgtcggccgcctccttccaggagacgacccgcgtgctcaccgaa
gccgctctgagccagaaggtcgacgacctgaagggcctcaaggagaacgtcatcatcggt
aagctcatcccggccggtacgggcctcgcccgctaccgcaacgccgtggtcgagcccgac
aaggcgatccgcgacaccatctacccgaacttcggtctgggtggcgatatggaggccggc
gccgacttctccgacgccgatctgagcgatgtggacttctccaacatcgacttcggcgat
ctgaagctcggcgacgacttcaatccggacgacttcctcaacgacgccggcggtcaggtc
gacctcggcggcgatctgggagacgtgctgtaa
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integrated database retrieval system
