Bifidobacterium lemurum: BL8807_02970
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Entry
BL8807_02970 CDS
T06861
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
blem
Bifidobacterium lemurum
Brite
KEGG Orthology (KO) [BR:
blem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
blem03032
]
BL8807_02970 (topA)
03400 DNA repair and recombination proteins [BR:
blem03400
]
BL8807_02970 (topA)
Enzymes [BR:
blem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BL8807_02970 (topA)
DNA replication proteins [BR:
blem03032
]
Prokaryotic type
DNA Topoisomerases
BL8807_02970 (topA)
DNA repair and recombination proteins [BR:
blem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BL8807_02970 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QOL34874
LinkDB
All DBs
Position
complement(770794..773880)
Genome browser
AA seq
1028 aa
AA seq
DB search
MATGTKLVIVESPTKARKIGGYLGEGYTVMASVGHIRDLAQPSQVPAEEKAKFGKFGVDV
NDGFRPYYMVGADKKRTVSELKAALKDADELYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITKDAINASLSQTRDVDGHMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFRRAPYWDVVATLGAPDALGEHTEFNARMVSLGGKRLAVSKDF
GPDGQLTPAGFSDNVLQLDEAGATAAAAALKSAAFTVMSMETKPYRRRPQPPFTTSTLQQ
TAGNRLGMSSRATMRAAQGLYENGYITYMRTDSVTLSQEAIAAARASVEYHYGKAFLSDA
PKQYATKTAGAQEAHECIRPAGSRFHDPAELASKLPVDQLRLYTLIWQRTLASQMADATG
STATVKLSAPTGETGEAVFQASGTVIEFPGFMKATGGAGASGAAKSAAAGADAASADGSD
SAAKSKSVGKSADDNASLPPMTTGQRLAASEVVADGHETQPPARYTEASLVKTLEAKEIG
RPSTYASIISTIMDRGYVYERGRALIPSWLAFSVTKLLETNFPKLVDYQFTADMENGLDQ
IAHGKETGREWLTRFYFGTGEGAAANADEAHEGLQQQVAQLGEIDARAINTIDIGDGLHV
RVGRYGPYLEDMEHTDAEGNPKRASLPDTLAPDELTVEVGHDLIENHSGGPRELGVDPAT
GGTVEVRNGRFGPYVALVMPAGEGETAAAGAAGSAGAKKGSKKADAAPRPKMASLFKTMS
PESLTLEDALRLLSLPREVGTYEEANAETGEVSQVTVAANNGRYGPYLTKTTPDGKSETR
SLGSEDEIFTVDVDKAKELFSQPKYGRGRGRGAAKPPLRELGADPETGKPVTIKDGRFGA
YITDGETNRTLPRQYAPETIEPADAFRLLAEKRAAGPSTRGRGRGGRAASAKGAKGAKAA
PKVNAAEAKRAERRAEVRKLADKGWANTRIAEKIGSTAATVKGDIDWLTANEGYTRPAVV
AKTPAKKK
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccggcaccaagctcgttatagtggagtccccgaccaaggcccgcaagatcggc
ggctacttgggcgagggatacaccgtcatggcgtcggtgggccatatccgcgatctcgcg
cagcccagccaggtccccgccgaggagaaggcgaagttcggcaagttcggtgtggacgtc
aacgacgggttccgcccgtattacatggtgggcgccgacaagaagcgcacggtctccgaa
ttgaaggccgcgttgaaggacgccgacgagctgtacctcgccactgatgaggaccgcgag
ggcgaggccatcgcatggcatctggtgcagacgctcaagcccaaggttcccgtcaagcgc
atggtgttccacgagatcaccaaggacgcgatcaacgcgtcgttgagccagacccgcgac
gtggacggccatatggtcgacgcgcaggagacccggcgtgtgctcgaccgtctgtatgga
tacgagctgtcgccggtgctgtggcgcaaggttgggccgggcctgtccgcgggacgtgtg
cagtcggtggccacgcgtctgatcgtggagcgtgagcgtgagcgcatggccttccgccgc
gcgccctactgggatgtggtcgccacgctcggcgcgcccgacgcgttgggggagcatacc
gaattcaacgcgcgtatggtctcgctgggcggcaagcgtctcgccgtctccaaggatttc
ggccccgacgggcagctgacgcccgcgggcttctccgacaatgtgctgcagcttgacgag
gccggcgccaccgccgcggctgccgcgctcaagtcggccgcgttcacggtgatgtcgatg
gagaccaagccgtaccgccgccgtccgcagccgccgttcaccacctccacgctgcagcag
accgcgggcaaccgtctcggcatgagctcgcgtgccaccatgcgcgccgcgcagggcctg
tacgagaacggctacatcacctatatgcgtaccgattcggtgacgctgagccaagaggcc
atcgccgccgcccgcgccagcgtggaataccactacggcaaggccttcctatccgacgcg
cccaagcagtacgcgaccaaaaccgccggcgcgcaggaagcccacgaatgcatccgcccc
gcgggatcgcgcttccatgatccggccgaactcgcctcgaaactgccggtcgaccagctg
cgcctgtacacgctgatctggcagcgcacactcgcctcgcagatggccgacgccaccgga
tcgaccgccaccgtgaagctgtccgcgcccacaggcgagaccggcgaggcggtgttccag
gcttccggcaccgtgatcgaattccccggattcatgaaggccaccggtggcgcgggcgcg
tccggcgcggcgaaatccgctgcggccggtgccgacgccgcctccgccgacgggtcggat
tcggccgcgaaaagcaagtcggtcggcaaaagcgccgacgacaacgcctcgctgccgccg
atgaccaccgggcagcggttggccgcctccgaagtcgtggccgacggtcatgagacccag
ccgcccgcgcgctacaccgaagcctcgctggtcaaaacgctggaagccaaggagatcggc
cgcccctccacctacgcgagcatcatctcgacgattatggaccgcggatacgtatacgag
cgcggaagggcgttgatccccagctggctcgcgttctccgtgaccaagcttttggagacc
aacttccccaaactggtggactaccagttcaccgccgatatggagaacgggctcgaccag
atcgcgcacggcaaggagaccggccgcgaatggctcacccgcttctacttcggcaccggc
gaaggcgcggccgcaaacgccgacgaggcgcatgaaggcctgcagcagcaggtcgcgcag
ctgggcgaaatcgacgcccgcgccatcaacaccatcgatatcggcgacggcctgcacgtg
cgcgtgggccggtatgggccgtatctggaggatatggagcatacggacgccgagggcaat
cccaagcgcgcctccctgcccgatacgctcgcgcccgacgaactcaccgtcgaagtgggg
catgatctgatcgagaaccattccggcggtccgcgcgaactgggtgtggatccggcgacc
ggtggcacggtcgaggtgcgcaacgggcggttcggtccatatgtggcgctggtgatgccc
gccggcgagggcgagaccgccgcggccggtgccgctggctctgcgggcgcgaagaaaggc
tcgaagaaggccgatgccgcgccgcgtccgaagatggcgagcctgttcaagacgatgagc
ccagaatcgctgactttggaggatgcgctgcgtctgctcagcctgccgcgcgaagtcggc
acgtatgaggaggccaacgccgaaaccggcgaggtgagccaggtgaccgtcgccgccaac
aacggccgctacggcccgtatctgacgaaaaccacgcccgacggcaagtccgagacgcgt
tcgctgggctcggaggacgagatcttcaccgtggacgtcgataaggccaaggagctgttc
tcccagccgaagtacgggcgtggacgcgggcgcggggcggccaagccgccgctgcgcgag
ttgggtgcggatccggagaccggcaagcccgtgaccatcaaggacgggcggttcggcgcg
tacatcaccgacggtgagacgaaccgcacgctgccgcgccagtatgctcccgagacgatc
gagccggccgacgcgttccgtctgctggcggagaagcgcgcggcgggcccttcgacccgc
gggcgcggacgtggcggccgcgccgcttcggcgaagggagcgaagggcgcgaaagccgca
ccgaaggtgaacgccgccgaggcgaagcgcgccgagcgtcgcgccgaggtgaggaagctc
gccgacaagggatgggccaatacgcgcatcgccgagaagatcggctccaccgcggctacc
gtgaagggcgacatcgactggctgaccgccaacgaagggtacacgcgccccgccgtggtc
gccaaaaccccggccaaaaagaagtaa
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