KEGG   Bifidobacterium lemurum: BL8807_08175
Entry
BL8807_08175      CDS       T06861                                 
Name
(GenBank) excinuclease ABC subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
blem  Bifidobacterium lemurum
Pathway
blem03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:blem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BL8807_08175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:blem03400]
    BL8807_08175
DNA repair and recombination proteins [BR:blem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BL8807_08175
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BL8807_08175
SSDB
Motif
Pfam: ABC_tran UvrA_DNA-bind AAA_21 DnaJ_CXXCXGXG nSTAND1 AAA_29 Anti-TRAP AAA_16 ATPase AAA_25 AAA_33 BCA_ABC_TP_C DUF463 DUF7129 HUTI_composite_bact MobB RNase_E_G_Thio Zn_ribbon_8 DZR
Other DBs
NCBI-ProteinID: QOL33755
LinkDB
Position
2131632..2134358
AA seq 908 aa
MTDGRRIGGADHIEIRGARVNNLKHVDVDIPLNRLVAVAGVSGSGKSSLALDVLYAEGSR
RYLDALSTYTRRRMTQAQRPQIDEARYLPPALALRQRPGVGGVRSTFGTMTELLNVLRLM
FSRLAHHRCPNGHYHAPTIAVAAETPFFCDECGARIDAPGAEMLAFNSTGACPRCQGTGL
VRDVDDATLVPDDSLTIDEGAVLPWKMFGWRVQNDIAREFGVRTDVPFRDLTDKERDIVF
NGPEEKKHIVVTSMKGVHELDFTFRNARLTVTKELERAADEKRLARVMRFVTEHTCPDCD
GTRLSEAARWPLIDGINLAQATAMTLDGALVWVRGVPAGLPDEMRPMAQALADTFEEMGQ
RLVQLGLGYLGLDRSGESLSTGERQRAQLARAVRNETTGVLYVLDEPSTGLHPANMEGLV
GVMRDLLGDGNSVVFVDHDVNVLRAADYFIEMGPGAGVEGGRVIAQGSPDEIIADPNSRI
AGFLAGREPALVRERQTASAAAVGTDENASFDDAAVRSKRKSGKGGKEAADHGGDTRWLR
MRTEAIHTVRPLDVAIPVGRLTAVTGVSGSGKTTMVLESLVPALQAAAEGRALPKHVSAI
DAAGIDTVRIVDSTPIGVNVRSTLATYSGIMDLLRRAFAATDEAQARGLALADFSYNTGS
LRCPQCDGAGRVNLDVQFLPDVTIACPACEGTRYRDEVNGIRLAVGERRMTLPQILAMSV
DALLDVFEGRASRTADSAQEAAAGSRRNATAPADKTNAHDAAGAAPADATRKRIAKALRT
LHDLGLGYLTLGEDTPSLSGGEAQRLKLSNELGKRQRTSLFVLDEPTVGLHPLDVRTLIG
VLQRLLDGGATIVVIEHDLDLIANADHVIDMGPGGGEQGGRIVATGSPERIAAASESVTG
RYLRALLG
NT seq 2727 nt   +upstreamnt  +downstreamnt
atgacagacggacgacgaatcggcggcgcggatcacatcgaaatccgcggcgcacgcgtg
aacaatctcaaacacgtggatgtggacatcccactcaaccgattggtcgccgtggcgggc
gtctccggctccggcaaatcctcactcgctttggacgtgctttacgcggaaggctcgcgc
cgctacctcgacgcgctgtcgacctacacgcgccggcgcatgacgcaggcgcaacgcccg
cagattgacgaagcccgctacctgccgcccgcgctggccttgcggcagcggccgggcgtg
ggcggcgtgcgctccactttcggcacgatgaccgaactgctcaacgtgctgcgcctcatg
ttctcccgactggcccaccaccgttgccccaatgggcactatcacgctccgaccatcgct
gtggccgccgaaaccccgttcttctgcgacgaatgcggcgcgcgcatcgacgcgccggga
gcggagatgctcgccttcaactccaccggcgcatgcccgcgctgtcaaggcaccggcctg
gtgcgcgacgtggacgatgcgaccttggtgccggacgattcgctcaccatcgacgagggc
gcggtgctgccgtggaagatgttcggctggcgcgtgcagaacgacatcgcccgcgaattc
ggcgtgcgcaccgacgtgccgttccgagacctgacggacaaggaacgcgacatcgtcttc
aacgggccggaggagaagaagcatatcgtcgtcacgtcgatgaaaggcgtgcacgaactc
gacttcaccttccgcaacgcgcgcctgaccgtcaccaaggagctggaacgcgccgccgac
gaaaagcgcctcgcccgcgtgatgcgcttcgtcaccgaacacacctgccccgactgcgac
ggcacgcggctgagcgaggccgcccgatggccgctgatcgacggcatcaacctcgcccaa
gccaccgccatgaccttggatggcgcgctggtgtgggtgcgcggcgtgccggccggactg
ccggacgagatgcggccgatggcccaagccttggccgacaccttcgaggagatgggccaa
cgactggtgcagctcggcctcggatatttgggcttggatcgatccggcgaatccctctcc
accggcgaacgccagcgcgcgcagctcgcccgcgccgtgcgcaacgagaccaccggcgtg
ctctacgtgctcgacgaaccctccaccggcctgcatccggcgaatatggaaggattggtc
ggcgtgatgcgcgacctgctgggcgacggcaactcggtcgtgttcgtcgaccacgacgtg
aacgtgctgcgcgccgccgattatttcatcgaaatgggacccggcgcgggcgtggaaggc
gggcgcgtcatcgcccaaggctcgccggatgagatcatcgccgacccgaactcgcgcatc
gcgggattcctcgccgggcgcgaacctgcgctcgtgcgcgagcggcagacggcatcggcg
gctgcggtcggcacggatgagaatgcctctttcgacgatgcggccgtccgttccaaacgc
aagtccggcaagggcggcaaggaagcggcggatcatggcggcgatacgcgttggctgcgc
atgcgcaccgaagccatccacaccgtgcggccgttggacgtggcgattccggtcgggcgt
ctcaccgccgtcaccggcgtctccggatcgggcaaaaccacgatggtgctcgaatccttg
gtgcccgccttgcaggccgcggccgaggggcgtgcgctgccgaagcatgtgagtgcgatc
gacgcggccggcatcgacacggtgcgtatcgtggactccacacccatcggcgtcaacgtg
cgctccaccctcgccacctacagcggcatcatggacctgctgcgccgcgcgttcgccgcc
accgacgaggcgcaggcccgtggacttgcgctcgccgacttctcctacaacaccggctcg
ctgcgctgcccgcaatgcgacggcgcgggccgcgtcaacctagacgtgcagttcctgccg
gatgtgacgatcgcctgccccgcctgcgaaggcacgcgctaccgcgacgaggtgaacggc
atacggcttgcggtgggggagcggcgcatgacgctgccgcagatcctcgccatgagcgtc
gacgcgctgctggacgtttttgagggccgcgcgtcacggacggcggattcggcacaagag
gccgccgcaggctcgcgaaggaacgcgaccgcgcctgccgacaagacgaacgcgcatgac
gccgccggagcggcgcccgccgacgcgacgcgcaaacgcatcgccaaagcgttgcgcacc
ctgcacgatctgggactcggctatctcacgctcggcgaggacacgccctcattgtccggc
ggcgaggcgcagcggctcaaactctccaacgaactcggcaagcggcagcgcacttcgctg
ttcgtgctcgacgaacccacggtcggcctgcacccgttggacgtgcgcacgctgatcggc
gtgctgcagcggctgctcgacggcggcgccaccatcgtggtcatcgaacacgacctcgac
ctgatcgccaacgccgaccacgtcatcgacatggggccgggcggcggcgaacaaggcggc
cgcatcgtcgccaccggttcgcccgagcggatcgccgccgcatccgaatcggtcacgggc
cgctatctgcgggcgctgttgggctga

DBGET integrated database retrieval system