Lederbergia lenta: NCTC4824_01681
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Entry
NCTC4824_01681 CDS
T06924
Symbol
yqfR
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
blen
Lederbergia lenta
Brite
KEGG Orthology (KO) [BR:
blen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blen03019
]
NCTC4824_01681 (yqfR)
03009 Ribosome biogenesis [BR:
blen03009
]
NCTC4824_01681 (yqfR)
Enzymes [BR:
blen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC4824_01681 (yqfR)
Messenger RNA biogenesis [BR:
blen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC4824_01681 (yqfR)
Ribosome biogenesis [BR:
blen03009
]
Prokaryotic type
rRNA helicases
NCTC4824_01681 (yqfR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_22
SNF2-rel_dom
Cas3-like_C_2
PFK
CP_ATPgrasp_2
DUF6444
Motif
Other DBs
NCBI-ProteinID:
SQI56016
UniProt:
A0A2X4VVE5
LinkDB
All DBs
Position
1:1704457..1705782
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AA seq
441 aa
AA seq
DB search
MTEHTFDRFEFKSFINKAIEELGFREPTEIQNKMIPLFLKGKSAIGQSQTGTGKTHAYIL
PMIEAIDPHRQEVQAVITAPTRELANQIYHEILKITEHLENETITTRCYIGGTDKQRTIN
KLKQQPQIVVGTPGRINDLVKEQALFVHTASVLVVDEADLMLDMGFLHDVDKIAGKMPKE
LQMLVFSATIPEKLKPFLKKYMENPAFEHVQPKQVFAENIEHILVPQRSREKVDLLKEML
VSYNPYLAIVFVNTKQMADKVAEQLSERGLKVGKIHGDLTSRDRRKMMKQIRDLEYQYIV
ATDLAARGIDIQGISHVINYELPRDLDFYIHRSGRTARAGNKGLAVTIYGQADEDALVQL
EKMGIEFTHLDLVKHEWVEIKDRNRRKNRKKTVDEVEIKARKFVRKPSKVKPGYKKKMKE
EIEQIKKRERRVNKRSKNQGK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacatacatttgatcgattcgaatttaaatcatttataaataaagcaatcgaa
gaactgggctttagagaacctactgaaatccaaaataagatgattccattatttttaaaa
ggtaaaagtgccattggacagtcacaaacaggtactggcaagacgcatgcctatatactg
ccaatgattgaagcaattgacccgcatcgccaggaagttcaagctgtcattactgcaccg
acaagagaattagcaaaccaaatttatcatgagattctaaaaattacagagcacttagaa
aatgaaacgattactacacgttgttatatcggtggaacggataaacagcgaacaataaac
aagttaaaacaacaaccgcaaattgtcgtaggaacaccaggacgcatcaatgatcttgta
aaagaacaggcgttgtttgtgcatactgcttctgtattggtagtagatgaggctgattta
atgcttgatatgggtttcctgcatgatgtggataaaattgccgggaaaatgcctaaagag
ctacaaatgctcgtattttctgccacgataccagaaaaattaaagccctttttaaagaag
tatatggaaaaccctgcttttgagcatgtacaaccgaagcaagtttttgctgaaaatatc
gaacatatcctcgtaccacaaagaagtagggaaaaggtagatctgctcaaagagatgttg
gtttcttataatccctatttggccattgtatttgtaaatactaaacaaatggccgacaaa
gtggcggaacaactaagtgaacgtgggttaaaagttggaaaaatacatggtgatttaacg
tctagagatcgtaggaaaatgatgaagcaaattcgtgatttggagtatcaatacattgtt
gcaacagatttggctgcaagaggtatcgatattcaaggaattagtcacgtcatcaattat
gagctacctagagatttggacttttatattcaccgatcaggtcgtactgcacgagcggga
aataaaggattagcggttacaatatatgggcaagcagacgaagatgctttggttcaatta
gagaaaatgggaattgaattcactcatcttgatttagttaagcatgaatgggtggagata
aaagatcgtaatcgccgtaaaaatcgcaaaaagaccgtggatgaagtggaaataaaagcg
cggaaatttgtcagaaagccatccaaagtaaagccgggatataaaaagaaaatgaaagaa
gaaatagagcaaattaagaagcgggaacgtcgagtgaataagcgatctaaaaatcaaggg
aaataa
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