Beggiatoa leptomitoformis: AL038_02230
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Entry
AL038_02230 CDS
T04090
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
blep
Beggiatoa leptomitoformis
Brite
KEGG Orthology (KO) [BR:
blep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
blep03009
]
AL038_02230 (rlmD)
Enzymes [BR:
blep01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AL038_02230 (rlmD)
Ribosome biogenesis [BR:
blep03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AL038_02230 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
RrnaAD
MTS
Methyltr_RsmB-F
TRM5-TYW2_MTfase
TRAM
Methyltransf_15
Methyltransf_4
PCMT
Methyltransf_11
Methyltransf_23
Ubie_methyltran
DUF3577
Motif
Other DBs
NCBI-ProteinID:
ALG66746
UniProt:
A0A2N9YBR0
LinkDB
All DBs
Position
516889..518220
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AA seq
443 aa
AA seq
DB search
MTRRRKNIPQEPVIATIENLSHDGRGVAHVEGKTVFIFGALPAEKVMFRYLSRQSRYDEG
TVVEVLEASPQRVSPRCQHFGVCGGCNLQHLEPLAQIQHKQATLLEHFQHIGKVEPEEIV
PPLRADVWGYRRKARLGVKFVRAKQLVFVGFREHHSGFLTDIRHCDVLHPLVGAKISALR
DLIEQLEAKEQIAQFEVAIDDTHAAIIIRNLTALSDDDQQKLIDFAKAHDFYFYLQPGKI
HSVTPLYPPDLPLTSLHYQLPTESLSFTFAPYDFTQVNTGINQQMIPQAIEWLAPQANET
VLDLFCGLGNFTLPLARRAMQVIGVEGDNDLLLRAEANAHQQNIHNVHYYAANLADKTLQ
QPWMQADYEKILLDPPRSGALEIIQQLPMTNTQRIVYVSCNPATLARDAGELVNTKGFRL
VKAGVMDMFPHTAHVESIALFVR
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgacccgccgtagaaaaaatattcctcaagaacccgttattgcgacaattgaaaatctt
tcccatgatggacgtggtgttgcacatgtagaaggcaaaaccgtttttatctttggtgca
ttacctgcggaaaaggtaatgtttcgttatctttcccgacaaagccgttatgacgaaggt
actgtcgtagaagtcttagaagcctcaccacaacgagtaagcccccgttgtcaacacttt
ggcgtttgtggcggatgtaatctgcaacacttagaaccactggcacaaattcaacacaaa
caagcaacattattagaacattttcaacatattggtaaagttgaacctgaagaaattgtg
ccaccattacgtgctgatgtatggggatatcggcgtaaagcccgcttgggtgtaaagttt
gttcgggcaaaacaactggtttttgttggttttagagaacatcacagcggatttttaaca
gatattcgtcattgcgatgtattacatccacttgttggcgcaaagattagtgcattacgg
gatttaattgaacaattagaagcaaaagaacaaattgctcaatttgaagtcgctattgat
gacactcacgcagccatcattattcgcaacttaaccgcactcagtgatgatgaccaacaa
aaacttattgactttgcaaaagcgcacgacttttatttttacctacaaccagggaaaatt
catagcgttacgccactatacccccctgatttgccactgaccagtttacattatcaattg
ccgacagaatctttatcattcacctttgcgccgtatgactttacacaagttaatacaggt
attaaccagcaaatgattccgcaagccattgaatggttagccccgcaggcaaatgaaaca
gtactggatttattttgtggcttgggtaattttacattaccgctggcgcgacgagcaatg
caagttattggtgtagaaggggataatgatttgcttttgcgggcagaagccaatgcccat
caacagaatattcataatgttcactactatgcagccaacttagcagataaaactttgcaa
caaccttggatgcaagccgattatgaaaaaatcttgcttgatccaccccgtagcggtgca
ttagaaatcattcaacagctacccatgaccaacacacaacgtatcgtttatgtatcttgt
aatcctgcaacattagcacgtgatgcgggtgaactggtaaatacaaaggggtttcgtttg
gtaaaagcgggcgtaatggatatgtttccacatacagcacatgttgagtcaatcgcactg
tttgtacgttga
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