Beggiatoa leptomitoformis: AL038_08300
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Entry
AL038_08300 CDS
T04090
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
blep
Beggiatoa leptomitoformis
Brite
KEGG Orthology (KO) [BR:
blep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
blep03016
]
AL038_08300
Enzymes [BR:
blep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AL038_08300
Transfer RNA biogenesis [BR:
blep03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AL038_08300
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
ALG67710
UniProt:
A0A2N9YHP5
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All DBs
Position
1989260..1991236
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AA seq
658 aa
AA seq
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MTDFDGQVWAAQDDDNVQFICISKRVKNKIQAVNEKGRDTRVSEEKLLWQYHSDVRDLNE
WQNLAFNLQTIIDSLRSQIDIALLWETALDMQLTDINDIAELYFGGDVTAEHFVAIWRVL
ADDRLYFKRRGKVWEARTTEQITELKLQREREQARAKAQLLANEWLKNAAYQDSATVTPE
ILPFIERLECWLRGDTDKDISELIERIAESARLNSRELAFEVLQKSGRLPANADRDVIVA
GLKPEFSTTVNEAAQAITHWNPPAEQKITDVFFSIDDEETREVDDALTIETDGDNWKITI
AIADPSVVIHRGDVLDREAMRRGTTVYLPTQTVLMLPESVSCNIASLAPQQVRSAILLRA
WLDKDANLINSSISREPIIVRRRLHYSDADKMLASTETDNDTLALQQLLNIAKQRQAQRL
AEGAFNLQRPELKIKVSNGQVSVEILDKDSPSRLLVAEMMILANHIAAKYAQHHQVPIIY
RTQESPLEPITPELLAEPLGFYRVRKLLRPSSLSLQPAGHSGLGLSAYTQLTSPLRRFAD
LVMQRQLVAHIVGEPLPYDQDELFKVLETAERTSRESRSVENDAKKRFFMQYLQESWSEQ
PFQAMLLDTVKGGYKVEMRPWGIDGFLGGNDRLELGQVVTVMVDKIRVRDGYARLKVV
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtgactgattttgatgggcaagtgtgggcagcacaagatgatgacaacgtacaatttatt
tgcatcagcaaacgggttaaaaacaaaatccaagctgtgaacgaaaaaggacgcgatacg
cgcgtctctgaagaaaaattactctggcaatatcacagtgatgtccgcgacctgaatgaa
tggcaaaatctcgccttcaatctccaaaccattattgatagcctccgcagtcaaatcgac
atcgcactactctgggaaactgcgctcgacatgcagttgacggatatcaatgacatcgca
gaactttattttgggggagatgttaccgctgaacactttgttgctatttggcgcgtatta
gctgatgaccgtttatacttcaaacgacgtggcaaagtctgggaagcccgcaccaccgaa
caaatcaccgaattaaaactacaacgtgaacgcgaacaagcccgagctaaagcccaatta
ctcgccaacgaatggctaaaaaatgcggcttatcaagacagtgcaaccgtcacacctgaa
atattacccttcatagaacgcctagaatgctggttacgtggcgataccgacaaagacata
agcgaacttattgaacgtattgcagaatctgcccgtttaaattcccgcgaattggctttt
gaagtgctacaaaaaagcggacgcttacccgccaatgctgaccgtgatgtcatcgttgca
ggcttaaaacccgaattttcgacaacagtcaacgaagccgctcaagctatcacacattgg
aatcccccagcagaacaaaaaattaccgacgtttttttcagcattgatgacgaagaaacg
cgcgaagttgacgacgcattaaccattgaaacagatggcgacaactggaaaatcaccatt
gcaattgctgacccctctgtcgttatccatcgcggagatgtcttagaccgcgaagccatg
cgccgtggcacaacggtttatttacccactcaaaccgttctaatgctccccgaaagcgtt
tcttgcaacatcgcaagccttgcaccacaacaagtccgctccgctatcctactgcgtgca
tggctagacaaagatgcaaatctaataaacagcagtattagtcgagaaccgattatcgtc
cgccgtcgcctccactacagcgacgcagacaaaatgcttgccagtacagaaaccgacaac
gacacccttgctttacaacaactcttaaacatcgccaaacaacgtcaagcccaacgctta
gcggaaggtgcgtttaatttacaacgtcctgaattaaaaattaaagtttccaacgggcaa
gtttctgtagaaattttagataaagactcacccagtcgcctgcttgttgcagaaatgatg
attctagcaaaccatattgctgcaaaatacgcacaacatcatcaagtgccgattatctac
cgtacacaagaatctccattagaacccattacgcccgaattattagcagaaccattaggt
ttttatcgcgtacgtaaattattacgtccttcaagtttatcgctacaacccgcaggacac
agcggactaggcttatcagcctacacacaattaacatcgccactccgtcgttttgccgat
ttagttatgcaacgccaactcgtcgcccacatcgttggtgagccgttaccgtatgaccaa
gatgaattattcaaagttttagaaaccgccgaacgcacttcgcgcgaatctcgctcggta
gaaaatgacgcgaaaaaacgcttttttatgcagtatttgcaagaatcatggagtgaacaa
ccctttcaagcaatgttattggatacggtaaaagggggttataaagttgagatgcgccca
tggggcattgatggctttttaggcggaaatgaccgtttagaattgggtcaggtggttact
gtgatggtggataaaatacgggttcgggatgggtatgcaaggttgaaggtggtataa
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