Beggiatoa leptomitoformis: AL038_08330
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Entry
AL038_08330 CDS
T04090
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
blep
Beggiatoa leptomitoformis
Pathway
blep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL038_08330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blep03021
]
AL038_08330
03019 Messenger RNA biogenesis [BR:
blep03019
]
AL038_08330
Transcription machinery [BR:
blep03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AL038_08330
Messenger RNA biogenesis [BR:
blep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AL038_08330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_25
AAA_22
Mor
AAA
Glucodextran_C
Motif
Other DBs
NCBI-ProteinID:
ALG67715
UniProt:
A0A2N9YHR9
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All DBs
Position
complement(1996073..1997329)
Genome browser
AA seq
418 aa
AA seq
DB search
MNLTELKKKNASELIQMAQDLGLEGTARARKQDIIFALLKAHAKKGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLHTGDTVSGKIRPPKEGERYFALLKVSEIN
FEAPEQAKNKVLFENLTPLFANDRFRLELGNGSTEDVTPRIIDLIAPIGKGQRGMIVSSP
KSGKTMMLQSIAHSIAINHPECYLIVLLIDERPEEVTEMMRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTIVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNNELHLDREIAEKRIYPAINI
NRSGTRREELLVSAEDLQKTWILRKLLHPMDNIAAMEFLMDRLKLTKNNAEFFDSMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaaccgaacttaagaaaaaaaatgctagtgaacttatccaaatggcgcaggat
ttgggactagaggggacagcccgcgcccgtaagcaagatataatctttgccctcctcaaa
gcccatgccaaaaaaggcgaagatatttttggtgatggtgtactcgaaattctacaagac
ggttttggatttttgcgctccgccgatagctcttatttagcgggtcctgatgatatttac
gtttcccccagccaaattcgtcgttttaatctccatacaggcgacaccgtctcaggtaaa
attcgcccgcccaaagaaggtgaacgttattttgccctgttaaaagtaagtgaaattaac
tttgaagcccctgaacaagctaaaaataaagttctatttgaaaatcttacccccttattt
gccaatgatcgcttccgcctagaacttggtaacggcagtaccgaagatgtaaccccccgc
atcatagacctcatcgcccctatcggcaaaggacaacgcggcatgatagtttcctcacca
aaatcagggaaaactatgatgctacaaagtattgcccattccatcgctatcaatcaccca
gaatgctacctcatcgtattattgattgatgaacgccctgaagaagttaccgaaatgatg
cgctcggttaaaggcgaagtcgtctccagtacctttgacgaacctgcaacccgtcacgta
caagttgctgaaatggttattgaaaaagccaagcgattggttgaacacaaacgcgatgtt
gttattttactagactccattacccgtttagcccgtgcctacaacaccattgtgccttcc
tctggtaaagtccttacaggtggtgtagatgccaatgcactgcaacgtcccaaacgcttt
tttggtgcagcacgcaatatagaagaaggcggcagtttaaccatcatcgctactgcgctc
gtcgacacaggctcacggatggacgacgtgatttatgaagaattcaaaggtacaggcaat
aacgaactacatttagaccgcgaaattgccgaaaaacgcatttatcctgccatcaatatc
aatcgctcaggcacacgccgtgaagaactactagtaagtgcagaagacctacaaaaaacg
tggatacttcgcaaactcctacacccgatggacaacattgccgcgatggaattcctcatg
gatagactaaaactgactaaaaacaatgctgaattctttgactccatgaaacgctaa
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