Beggiatoa leptomitoformis: AL038_13695
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Entry
AL038_13695 CDS
T04090
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
blep
Beggiatoa leptomitoformis
Pathway
blep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL038_13695 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blep03019
]
AL038_13695 (rnr)
03016 Transfer RNA biogenesis [BR:
blep03016
]
AL038_13695 (rnr)
Enzymes [BR:
blep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AL038_13695 (rnr)
Messenger RNA biogenesis [BR:
blep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AL038_13695 (rnr)
Transfer RNA biogenesis [BR:
blep03016
]
Prokaryotic type
tRNA degradation factors
AL038_13695 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ALG68558
UniProt:
A0A2N9YF45
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All DBs
Position
complement(3266900..3269098)
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AA seq
732 aa
AA seq
DB search
MQRRKKKNPRRTADIPKADPYAEREQQKYQDPIASREFIMAHLAEAGQPLNFQAIAERLK
LNNDEVKLDALSRRLRAMERDGQIIRNRREGYGLAKKMDLICGRVSANADGAGFLIPDTG
GEDLFLPPKQMRTLFHGDRAMVSIGGLNHRGKREGILVEVLERNTQEIVGHFFRQKGLAF
VTSKNRRITHDILIPPADENNAEEGQIVVVKIIEQPSKHHPPIGQIVDIIGKNEAPGMET
DIAIRSYSLPYEWSDDVLSEIKHLKEKIPASAIKDREDLRDIPLVTIDGEDAKDFDDAVY
CEPRGKGWRLLVAIADVASYVKPNTALDMEAQARGNSVYFPNRVVPMLPEILSNGLCSLK
PHVDRLCMVCELFIDVYGRTRRIRFFEGVMRSQARLTYTEVGNVLAGENTQFRYPELLPH
IQHLHKLYQLLLTRRQKRGAIEFETVETKILFDDNKKIEKIVAITRNDAHRLIEEMMLAA
NVATAEWLEKHEMPALYRNHEGPTPDKLKDLHSFLGGLGLRLGGKEIPTALDYAKLMEKI
KDRPDVRLIQTVLLRSLRMAVYSPENKGHFGLAYTGYTHFTSPIRRYPDLLVHRALKHLI
KKQDPKKFFYNQGELERLGEVCSMTERRADEATRDVVSWLKCEYMRNKVGDNYEGLVTAV
TSFGLFVELEGVYVEGLVHVTALRNDYYHYDPAGQCLRGERTGTIYRLSDRLKVKVMRVD
LGDRKIDFELAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgtcgtaaaaagaaaaatccccgtcgtactgctgatatacccaaggcagacccc
tacgcagaacgcgaacaacagaaatatcaagaccccatcgccagccgtgaatttatcatg
gcacaccttgcggaagcagggcaaccactcaactttcaagcaattgctgaacggctgaaa
ttaaataacgatgaagtcaagttagatgccttaagccgtcggttacgtgcgatggaacgg
gatggacaaatcatccgtaatcgtcgtgaaggttatggactcgcaaaaaaaatggattta
atctgtgggcgcgtatcagcaaatgcggatggcgcaggctttttaattcctgacacaggc
ggagaagacctatttttaccgcctaagcaaatgcgtaccctctttcatggtgatagagca
atggtaagcattggcggtcttaaccatcgcggtaagcgcgagggaatactcgtcgaagtt
ttagaacggaatacccaagaaattgtcgggcatttcttccgtcaaaagggacttgcgttt
gtcacctcaaagaatcgtcggattactcacgacatcttaatcccccctgctgatgaaaat
aatgccgaagaaggacaaatcgtcgtcgttaaaatcatcgaacaacccagcaaacaccac
ccacctattgggcaaattgtcgatatcatcggtaaaaacgaagcccctgggatggaaacc
gatattgctatccgctcttacagcctaccgtatgaatggagcgacgacgttttatctgaa
attaagcacttaaaagaaaaaattcccgccagtgctatcaaagaccgcgaagatttacgt
gatattcccttagtaaccattgatggggaagacgcgaaagactttgatgatgctgtttat
tgtgaaccacgtggcaaaggctggcgattattagttgctattgccgatgttgccagctac
gttaaacccaacaccgcattagatatggaagcacaagcacggggaaattccgtttacttt
cccaatcgtgttgttcccatgttgcctgaaattttatccaacggcttatgctcgctaaaa
ccgcatgttgaccgcctatgtatggtttgcgaactgtttatcgatgtatatggtcgcaca
cgccgtattcgtttttttgaaggggttatgcgttctcaagcccgtttaacctatactgaa
gtgggcaacgtactggcaggagaaaatacacaatttcgttatccagaattattgccgcat
attcaacacttacataaactctatcaattattgctaacccgacggcaaaaacgtggcgcg
attgaatttgaaaccgtagaaaccaaaattctattcgatgacaacaaaaaaattgaaaag
attgtggcaattacccgcaatgatgcacatcgtttaattgaagaaatgatgctcgcagct
aacgttgcaacagcagaatggctagaaaaacacgaaatgcccgcgttgtatcgtaatcat
gaaggtcctacccctgacaaactcaaggatttacacagctttttaggcggtttagggtta
cgtttaggcggaaaagaaattccgactgcattagattacgccaaactcatggagaaaata
aaagaccgtcctgacgtgcgtctcattcaaacggttttactccgtagtttacgcatggcg
gtttatagccctgaaaataaagggcattttggcttagcttatacgggttatacccatttt
acctcgccaattcgccgttatcctgatttactagtccaccgtgcgttaaaacacctcatt
aaaaaacaagacccgaaaaaattcttctataatcaaggtgaattagaacgattaggcgaa
gtttgctcaatgacagaacggcgtgctgatgaagctacccgcgatgttgtcagttggcta
aaatgcgaatatatgcgtaacaaagtcggcgacaactatgaaggtctagtaacagccgtt
acatcgtttggcttattcgttgaactagaaggtgtttatgtagaaggattggttcatgta
accgcattacgtaatgattattatcattatgaccccgctgggcaatgcctgcgtggcgaa
cggacaggcacaatatatcgtctctctgaccgcttaaaagtaaaagtcatgcgtgttgac
ttaggcgacagaaaaattgatttcgaattagccaattaa
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