Bifidobacterium longum subsp. infantis 157F: BLIF_0423
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Entry
BLIF_0423 CDS
T01420
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
blf
Bifidobacterium longum subsp. infantis 157F
Pathway
blf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BLIF_0423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blf03021
]
BLIF_0423
03400 DNA repair and recombination proteins [BR:
blf03400
]
BLIF_0423
Enzymes [BR:
blf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BLIF_0423
Transcription machinery [BR:
blf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BLIF_0423
DNA repair and recombination proteins [BR:
blf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BLIF_0423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAJ70567
LinkDB
All DBs
Position
539028..543065
Genome browser
AA seq
1345 aa
AA seq
DB search
MLDVNAFDKIRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNV
TPKDLERVIYFASYMVTEVNEDERHNDLPGLQDEFDSEIKRLEQRRDSDIEARAKKVEED
LAALEETGEAKGPARTKLRNGAERDMAAIRTRYNDQIARVDAVFDKFKKLKPGDMVDDVD
LWREMQDRYGDYFDGCMGAEAIKKRLQSLDLETISKELREEIKDASEQRKTKALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DAEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVLEGAKGQG
RVFSSLEEAEMALDRHEIDMQAKVLIRLPESFVLPKNWEPGEVKVLDPREGEDEVVKEER
FHDGTVLFATSYGRILFNETLPTDYPFVNEQVAKGRLSKIVDDIAMRYSTQQVAATLDAL
KDLGFTRAPWSGVSFAFSDVNEPPERDEKIAEYEAKADKVNANYEMGLLTEEARRQELID
LWTECTAEVSKEVEEKFDPTSNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAG
LPIRVAERDNDGNLVLVKAADGGPYSRLLAADVIDPADGQTVLYKRDDALSMDVLNDLVA
HGVEEVKCRSVLTCESKRGVCAKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRS
FHSGGVAAASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADS
GAPKEDGVIKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIV
EEVHTVYRSQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDLLPGELVDNARFREINRNIVK
NGGRPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIG
KLIPAGTGLARYRNAVVEPDKAIRDTIYPNFGLGGDGDLGDATFSDADLSDLNFSNLEFG
DLKLGDDFNPDDFYSDQGGQPDIEE
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaagattcgcatcggccttgccaccgccgatgacatc
cgtggttggagccacggtgaggtcaagaagcctgaaaccatcaactaccgtacgctgaag
cctgagaaggacggtctgttcggcgaacagatcttcggcccgacccgtgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgatgcggcgtc
gaagtgacccgcagccgcgtgcgccgtgagcgcatgggccacatcgagctcgccgccccg
gtgacgcacatctggttcttcaagggtgtgccttcccgcctcggctacctgctgaacgtc
accccgaaggatctggagcgcgtgatctacttcgcctcctacatggtcaccgaggtgaac
gaggacgagcgccacaacgatctgcccggcctgcaggacgagttcgattccgagatcaag
cgccttgagcagcgccgtgactccgacatcgaagctcgcgccaagaaggtcgaagaggat
ctcgccgcccttgaggagaccggcgaggccaagggcccggcccgcaccaagctgcgtaac
ggtgccgagcgcgatatggccgccatccgcacccgctacaacgaccagatcgcccgtgtg
gacgccgtcttcgacaagttcaagaagctcaagcccggcgacatggtcgacgacgtggac
ctgtggcgcgagatgcaggaccgctacggcgattacttcgacggctgcatgggcgccgaa
gccatcaagaagcgcctgcagtccctcgacctggagaccatctccaaggaactgcgcgag
gagatcaaggacgcttccgagcagcgtaagaccaaggctctgaagcgcctcaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctcgacgtgatcccggtc
atcccgccggacctgcgcccgatggtccagctcgacggtggccgtttcgccacctccgac
ctcaacgacctgtaccgccgtgtgatcaaccgtaacaaccgtctgaagcgactgatcgag
ctcggtgcccctgaaatcatgctcaacaacgagaagcgcatgctccaggaagccgtcgac
tccctgttcgacaacggccgtcgtggtcgcccggtcaccggtgcctccaaccgtccgctg
aagtccctgtccgacatgctcaagggtaagcagggtcgtttccgtcagaacctgctcggt
aagcgagtcgactactccggccgttccgtgatcgtggtcggcccgtccctgcgcatgcac
cagtgtggtctgccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgc
ctcgtggacctgaactacgcgcagaacatgaagtccgccaagcgtctcgtggaccgcggc
gacgccgaagtgtggggcgtgctcgaggaggtcatctccgagcaccccgtgctgctcaac
cgtgcacctacgctgcaccgtctgggtattcaggcattcgagccgatcctggtggaaggc
aaggccatccacctgccgccgctggcctgcgccgccttcaacgccgacttcgatggtgac
cagatggcagtccacctgccgctctccgccgaagcccaggctgaggcccgctcgctgatg
atggcttccgacaacatcctgaagccggctgacggtcacaccgtgaccatgccgtcccag
gacatgatcctcggtctgtactacctgtccaccgtgctggaaggcgccaagggccagggc
cgcgtgttctcctcgctggaagaggccgaaatggccctcgaccgccacgagatcgatatg
caggccaaggtgctcatccgcctgcccgagagcttcgtgctgccgaagaactgggagccc
ggcgaggtcaaggtgctcgacccgcgcgaaggcgaggacgaggtcgtcaaggaagagcgc
ttccacgacggcaccgtgctgttcgccacctcctacggccgcatcctgttcaacgagact
ctgccgaccgactacccgttcgtcaacgagcaggtggccaagggccgtctgtccaagatc
gtcgatgacatcgccatgcgttactccacccagcaggtggccgccacgctggatgccctg
aaggatcttggcttcacccgtgcaccgtggtccggcgtgtccttcgcgttctccgacgtg
aacgagccgcccgagcgcgacgagaagatcgccgagtacgaggccaaggccgacaaggtc
aacgccaactacgagatgggtctgctgaccgaggaagctcgccgtcaggaactcatcgac
ctgtggaccgagtgcaccgccgaggtgtccaaggaagtcgaggagaagttcgacccgacc
tccaacctggccatcatcgtgcagtctggtgcacgaggcaacatgatgcagatcaaccag
atcgcaggtatgcgaggcctcgtggctaacccgaagggtgagatcattcctcgtcctgtg
aagtccaactaccgcgacggcctgtccgtgctggagtacttcatctcccagcacggtgcg
cgtaagggtctggccgataccgcactgcgtaccgcagaatccggttacctgacccgtcgt
ctggtcgacgtctcccaggatgtcatcgtgcgcgaagaggactgcggcaccaaggccggt
ctgcccatccgcgtcgccgagcgcgacaacgacggcaacctggtgctcgtcaaggccgcc
gacggtggcccgtactcccgtctgctcgccgccgacgtcatcgacccggccgacggacag
accgtgctgtacaagcgcgacgacgccctgtccatggacgtgctcaacgacctcgtggcc
cacggtgtcgaggaagtcaagtgccgttccgtgctgacctgcgagtccaagcgcggcgtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtcgatgtcggcgagacc
gtcggtatcgtcgccgcccagtccatcggtgagcctggtacccagctgacgctgcgttcc
ttccactccggtggtgtggccgcggcatccgatatcacccagggtcttccccgtgtcacc
gagcttttcgaggcgcgtaccccgaagggcgaggcgccgatcaccgagttcgccggcagc
atcaagatcgtggagaacgatcgcggtcgccagatcatcctgaccccggacgccgattcc
ggcgcaccgaaggaagacggcgtgatcaagccgatcacctaccaggtctccaagcgcgtg
ccgctcaaggttgccgacggcgaccacatcaaggtcggcacccagctggtcgaaggttcc
gtggatcccaagaagatcctcaccatcctcggcaagcgcgccgcccaggtcaacatcgtg
gaggaggtgcacaccgtgtaccgctcccaaggcgtggatatccacgacaagcacatcgag
gtcatcgtgcaccagatgacccgccgcgtgaccatcatcgactccggcgacaccgacctg
ctgccgggtgagctggtggacaatgcccgcttccgtgagatcaaccgcaacatcgtcaag
aacggtggccgtccggccgtcggtcgtccggcgctcatgggcatcaccaaggcgtctctg
gccaccgactcctggctgtccgccgcatccttccaggagaccacccgcgtgctcaccgaa
gccgcgctctccgagaaggtcgacgacctcaagggcctcaaggagaacgtcatcatcggt
aagctcatcccggccggtacgggcctcgcccgctaccgcaacgccgtggtcgagcccgac
aaggccatccgcgacaccatctaccccaacttcggtctgggcggcgatggcgatctcggc
gacgcgaccttctccgacgccgacctgtccgacctgaacttctcgaacctcgaattcggc
gatctgaagctcggcgacgacttcaaccccgatgacttctactccgatcagggcggtcag
cctgacatcgaggagtaa
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integrated database retrieval system
