Bifidobacterium longum subsp. infantis 157F: BLIF_0475
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Entry
BLIF_0475 CDS
T01420
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
blf
Bifidobacterium longum subsp. infantis 157F
Pathway
blf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLIF_0475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blf03019
]
BLIF_0475
03400 DNA repair and recombination proteins [BR:
blf03400
]
BLIF_0475
Enzymes [BR:
blf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLIF_0475
Messenger RNA biogenesis [BR:
blf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BLIF_0475
DNA repair and recombination proteins [BR:
blf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BLIF_0475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HRDC
DEAD
RQC
RecQ_Zn_bind
Rhodanese
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAJ70619
LinkDB
All DBs
Position
617689..619554
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AA seq
621 aa
AA seq
DB search
MLAGRDVLGVMPTGAGKSVCYQIPAALSPGMTLVISPLISLMRDQVDALNDLGLPAAFIN
TTQTPDEQAMVFAQAAAGQIKLLYVAPERLETGRFRDFAARTPISLIAVDEAHCVSQWGQ
DFRSSYLGIGDFIAGLPQRPPVGAFTATATERVRRDIVGLLGLRNPAVTVTGFDRPNLYF
DVVKLETKYKAAWVARYVADHPDESGIVYCATRKTTEALTDTLNQMGHPAVAYHGGMSPD
AREAAQRDFITDKVPVVVATNAFGMGIDKSNVRYVIHHNLPESIEAYYQEAGRAGRDGEP
SRCTLLWNESDIVTRRRLLDNDYENERLTPEEQEIVRQSKRRLLDGMVGYCRTTDCLHWY
MTRYFGQELSPNAGSTAGEDIAADSSQSGKCGACSNCESTFETIDVTRVAQAISRCVHDV
GQRVGSGKIVKILRGSRAQDLAWLNPERMPTFGMLKDVNEARVRDVLSQMATDGYLSIAE
GRMPIVMFGARAAETAAPDFHYEIKRVERKSEAAGSGRSGGVADTADSANVPGDALGSYI
PDDDEESLFRKLRELRRTIAQEIGKPPYIVFSDKTLRDMARIKPVTNAQFLAVNGVGQHK
LDLYGQRFMQAIASFNAGSAS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgccggacgcgatgtcttgggcgtgatgcccaccggcgcaggcaagtccgtgtgc
taccagattcccgccgcgctcagcccgggtatgactttggtcatatctcccttgatttcc
ctgatgcgcgaccaggtcgatgcgctgaacgacctcggtctgccggccgcgttcatcaat
accactcaaactcccgacgagcaggcgatggtgttcgcccaagccgccgccgggcagatc
aaactgctgtacgtggccccggaacgcttggaaaccgggcgattccgcgactttgccgcc
cgtacgccgatctcgctgatcgccgtggacgaagcccactgcgtctcccagtggggtcag
gacttccgctcgtcgtacttaggtatcggcgatttcatcgccgggctgccgcagcgtcca
ccggtgggtgcgttcaccgccaccgccaccgaacgggtgcgccgggacatcgtgggactg
ctgggattgcggaatccggccgtcaccgttaccggattcgaccggccgaacctgtatttt
gatgtggtcaaactggaaaccaaatacaaggccgcatgggtggcgcggtatgtggccgac
catccggacgaatccggcatcgtctactgcgccacccgcaagaccaccgaagcgctcacc
gacacgctgaaccagatggggcatccggctgtcgcctaccatggcggcatgtcgccggac
gcgcgtgaggcggcccagcgcgacttcatcaccgacaaggtgccggtggtcgtggccacc
aacgctttcggcatgggcatcgataagtccaacgtgcgttacgtcatccaccacaatctg
cccgaatccattgaggcctactatcaggaggccggccgcgcgggccgtgacggcgagccc
agccgatgcacgctgctgtggaatgagtcagacatcgtcacccggcgtcggttgctggat
aacgattatgagaacgaacgattgactcccgaagagcaggaaatcgttcgccagtccaag
cgccggctgctggacggtatggtcggctactgccgcaccaccgactgcctgcactggtat
atgacccggtatttcggtcaggaattgtcgccgaatgctggttccacggcgggtgaagac
attgcggcggactcttcgcagtccggcaaatgcggtgcctgctcgaactgcgaaagcacg
ttcgagaccatcgacgtgacccgcgtggcgcaggcgatcagccgttgcgtgcatgacgtg
gggcagcgcgtcggttccggcaagatcgtcaagatcctgcgcggttcgcgggcacaggat
ctggcatggctgaacccggagcggatgcccaccttcggcatgctcaaggacgtgaacgag
gctcgcgtgcgcgacgtgttgagccagatggccacggacgggtacctgtcaatcgccgaa
gggcgtatgccaatcgtcatgttcggtgcgcgggcggccgaaaccgccgctcccgacttc
cactatgagatcaaacgggtggaacgcaagtcggaggcggccggttccggtcggagcggg
ggagtggctgatactgccgattccgccaatgttcccggcgatgcgctgggctcgtatatc
ccggacgatgacgaggaatcgctgttccggaagctacgcgaactgcgacgcaccatcgcc
caggaaatcggcaagccgccgtacatcgtgttctccgacaagaccttgcgcgacatggcc
cgcatcaagccggttaccaacgcgcaatttctggcggtcaacggcgtcggtcaacacaag
ctcgacctctacggccagcgcttcatgcaagccatcgcctcgttcaatgccgggagtgcg
tcataa
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