Bifidobacterium longum subsp. longum F8: BIL_05270
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Entry
BIL_05270 CDS
T02580
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
blg
Bifidobacterium longum subsp. longum F8
Pathway
blg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIL_05270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blg03019
]
BIL_05270
03009 Ribosome biogenesis [BR:
blg03009
]
BIL_05270
Enzymes [BR:
blg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BIL_05270
Messenger RNA biogenesis [BR:
blg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BIL_05270
Ribosome biogenesis [BR:
blg03009
]
Prokaryotic type
rRNA processing factors
BIL_05270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RD3
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CBK70157
LinkDB
All DBs
Position
complement(605316..608351)
Genome browser
AA seq
1011 aa
AA seq
DB search
MQRAARSIVPTDNREGFVNDGTDNSTVSNADSAAAVNAAPAAASQPAEPVRRRRGGRRVV
RGTGAAGASLELQVQERAPLFEAPALPDAGTAADSKSADSSDSDESSDSQDSAERPTRRR
SRRAASAVADSDSEDDRPRRSRRTVSADDFDDDDAPRSRRRSVVDDDDYDEDRPVRRRSR
SRQSDDDDYEDRPVRSRSRRASMDMDDDDEDRPVRRRSRRAVADTHEDTPDERLFDAVES
LPSGHETVRRGKPMTSLLFQEPVLPAAVDAHDTADTRDDDVDADERPSRRSRRSRSHDDD
DAQPRSRRRDDRGRASADRDASRDAASGDTNADHDDFDADDTSDSRRSRRSRRLNAQERR
AAAEVEQIEEDLELDDIAYSPIAEEEGDEESDATRTRSRRRRRRGSRGETGANGEHDTAE
NDAEDTRSRRRDDRDDHDRDRDEDDEEQTVTRRRRRRRGGKNGEGTDDQSQNSEQPLVRR
SRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREK
EHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYA
GEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG
GMTGVSRKLSERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERIN
AKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLK
DKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRF
IGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLA
RDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPY
ALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTAEE
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcgccgcgaggagcattgtgcccactgacaaccgtgaaggtttcgtcaacgac
ggaaccgataattcaaccgtatccaatgccgattcggctgcagccgtgaacgctgcgcct
gccgccgcctcccagcccgccgaacctgttcgccgtcgtcgtggcggccgccgcgtggtc
cgcggcaccggtgctgccggcgcttctctggaactgcaagtgcaggaacgcgccccgctg
ttcgaagcccccgcgcttcccgatgccggcactgcggccgattccaagtcagccgattcc
agcgattccgatgaatccagcgattcccaggattccgccgaacgtccaacccgccgccgt
tcgcgccgcgccgcttccgcagtggccgactcggatagcgaggatgatcgtcctcgtcgt
tcgcgccgcactgtcagtgccgatgatttcgatgacgatgacgccccacgttcccgccgc
cgttcggttgtggacgatgacgattacgacgaggaccgcccggttcgccgccgctctcgc
tcccgccagtccgacgatgatgactacgaggatcggccggttcgctcccgctctcgccgt
gcgtctatggatatggatgatgatgacgaggaccgtccggttcgccgtcgttctcgccgt
gcagttgcggatacgcacgaggacaccccggatgagcgcctgttcgacgcggtcgaatcc
ctgccctctggccacgagaccgtgcgccgtggcaagccgatgacgtccctgctgttccag
gaaccggtgctgcccgccgccgtggatgcgcacgataccgctgacactcgtgatgacgat
gttgacgccgacgaacgcccgtctcgtcgctcccgccgctcgcgcagccacgacgatgac
gatgcccagccgcgcagccgtcgccgcgacgatcgcggccgcgcctccgccgaccgtgac
gcttcccgtgacgccgcgtccggcgataccaacgccgatcacgacgatttcgacgccgac
gacacctcggactcccgccgttcgcgccgctcccgccgtctgaacgcccaggagcgccgt
gcagccgccgaagtcgagcagattgaggaagacctcgagctggacgatatcgcctactcg
ccgattgccgaagaggagggcgacgaagaatccgacgccacccgcacccgttcgcgccgt
cgccgccgtcgcggctcacgcggcgaaaccggtgccaacggcgagcacgataccgccgag
aacgatgccgaagatacgcgttcccgccgtcgtgacgatcgcgatgatcatgaccgtgat
cgcgatgaggacgatgaggagcagaccgttactcgccgtcgccgtcgccgtcgtggcggc
aagaacggcgagggcaccgacgaccagagtcagaacagcgaacagccgctggtccgacgc
tcccgcaagcagcagtacatcgacgagatcactgatgtggagggctccactcgtctcgag
gccaagaagcagcgccgccgtgacaaccgccgtgagcgcagccgccagagccagctcatg
gaacaggacttcctcgcacgccgcgagaacgtggaccgcctgatggtggtgcgtgagaag
gaacatcacacccagatttccgtggtggaagacaatgttctggtcgagcattacgtctcc
gacattcaggaagtacagaccgtcggcaacatctaccttggccgcgtgcagaacgtgctg
cccagcatggaggccgcatttgtggacatcggccaggcccgcaacggcgtgctctacgcc
ggcgaggtcaactgggatgccgctcgtctcgaaggccagccgcgccgcatcgagctggcg
ttcaagtccggcgacccggtgctcgtgcaggtcactaaggacccgatcggccacaagggt
gcccgcctgacctctcaggtcacgctcgccggccgcttcctggtgctcgtgccatccggc
ggcatgaccggcgtgagccgcaagctttcggagcgcgaacgcagccgtctgaagaacatc
gtctccaagatcgccccgaaagacatgggcgtgatcatccgtaccgcagccgagggcgca
tccgaagacgccatcgtcaaggatctcgaatcgctggtccgccagtgggagcgcatcaac
gccaagcgcgaggaattctggcacggcaagcgcccgaagctcctgcagggcgagcccgac
gtggccatccgcgtggtgcgcgacatcttcaacgacgacttcagcaagctcatcgtggaa
ggtgacaaggtctacgaccgtatcgaggaataccttgacaccatggcccccgacttgaag
gacaagctggagaagtgggacccggccgagcatgaaggcaaggacgtgttcgacaagtgg
tccatcgactcccagctgcgtaagggcatggagcgtcaggtctacctgccgtccggcggc
tcgattgtcatcgatcgcaccgaagccatgaccaccattgacgtgaacaccggccgcttt
atcggcaagggcaagtccttggaagaaacggtgacgcgttgcaacctggaggcgtctgaa
gagatcgcccgccagctgcgcctgcgcgatatcggtggcatggtgatgatcgactatgtg
gatatggtcatgcccgccaaccgcgatctggtgctgcgccgcttggtcgaatgcttggca
cgcgaccgcaccaagcatcaggtggccgaagtcacctcgctcggtttggtgcagatgacc
cgcaagcgcatcggccagggtctggtcgaggcgttctccgaggaatgcccgacctgcaag
ggccgtggtttcatcctgcatgatcagccgaccgtttcggccgactacgacgatccctac
gcgcttcgcggtggcgacccgttcgtcaaaaccaacaagcacggtcgcggcaccgctccc
gctcccgaaccggctggttccagcgccgacgtcaaagccaaactggctcagattgccgcc
gctgccgtcgctgccaacaacacggcggaagagtaa
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