KEGG   Bifidobacterium longum subsp. longum F8: BIL_08000
Entry
BIL_08000         CDS       T02580                                 
Name
(GenBank) ATP dependent helicase, Lhr family
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
blg  Bifidobacterium longum subsp. longum F8
Brite
KEGG Orthology (KO) [BR:blg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:blg03400]
    BIL_08000
Enzymes [BR:blg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BIL_08000
    5.6.2.6  RNA 3'-5' helicase
     BIL_08000
DNA repair and recombination proteins [BR:blg03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BIL_08000
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr WHD_4th_Lhr DEAD WHD_3rd_Lhr Helicase_C ResIII DUF6406 Cas3-like_C_2 PhoH
Other DBs
NCBI-ProteinID: CBK70374
LinkDB
Position
962890..967623
AA seq 1577 aa
MYESLSLFSEPTKMWFEHAFGQPTEAQAQAWPAIHSGRNVLVIAPTGSGKTLAAFLSAID
RLMTVPRTRRAGVRVLYISPLKALAADVAKNLEQPLEGIAAQCEAQGLPVPKIAVATRSG
DTTAQERRRIASHPPDILVTTPESLYLLLTSKAGRILGTVDTVIVDEIHAVAGTKRGAHL
AVSLERLENLVTESRKRDAIDADADEGGDAAVDAGRGDRHMQCIGLSATVNPPEKAARFL
GGGQPVTIVNPGGRPAMDLRMIEPLENMRDLQSVNAKQRVGGVDAERSAPHISGVTPAMQ
RLAERRGIVPVDDRDVSSTSGDDSDASDAFDSSALVGAAGDRTSGSIWPVVERSILDEIL
AHRTTLVFVNSRGVAEKLTARLNDLYAQTRHGTNPDTVRDLGSPEGREGFSTHYDAVVGS
TTMLVGSHEGDDVIAMAHHGSVSKDRRKMIEERLKRGELRCVVATSSLELGIDMGSVDLV
IQVDTPLSVSSGLQRVGRADHQVGGVSHALFYPLTRQQIVTGAASLEAMIAGDIEPLAVP
RNPLDILAQQTVAAAAMHDLNADDWYATVRRAAPFAELPRDMFDAVIGMMSGEYNSEEFS
AFRPRLVWNRDNGLISARPGSQKVAVTSGGTIPDRGLYTAVLPEADAGKGQRRVGELDEE
MVYESRVGDVITLGTSTWQIQEITRDRVVVTPAPGRTARLPFWHGEGAGRDYGFSRTIAR
FTREIAAGLDVKRTEGRSAAEGPAVPTFIPTILTRLHHDGLDANAITNLARLLSEQQAAT
GAVPSDQTLIVERTRDEDGGWRIVLLSPFGRRVHEPWSMAISRRLRQRYGFDGQVYAADD
GIVIQLPDGDGHIPAQDLFLFDPEDLKADVERQVGESVLFAARFRECAARSLFMPRSDPG
RRVPLWQQRLRAAQLLQSARVVKNFPLLLETARECLQDVYDMPALNEVMTGLQAGTITVK
DVETESPSPFAENILFGFVGVVMYQYDQPQAERSAQLLSLDPHVLERLLGTTDMAQVLNP
DVIREVEQELGEHTFWNELADDDVTGRVTRYAKTHGPFTADQLIADLHLDATDAVHTLDV
LAAKGELLQGHFVDDDEQGQQWLHKDVFRRIRSRSLAKARKAVKPVESEAFQMFLIDRQG
IGPVGGERYEGADGLMRVIEQLEGISLPTALWESAVFPARVRDYQPALLDELLTSGDVVW
VGSKTGGTSAMDPGEVAFYPADSILFSGVEHGTTSNASDATMPEAILTALDSGGAFHARQ
LMDAAKRAWNETAEPDINPNTGEIIPQEWSEQQFKDALWSLVWQGKVTNSSFAPVRALTA
GAASPRKSTTSRRRGRVAPIRRATTDMTLGGLWSAVIGQAEAEDTDQTERALALVETLLD
RYGVIAQPVIDKENIPGGYSALYPVLNRMEEHGRLVRGMFVRGFGAAQFAERDTVDALRH
PSEHRGQSVVALSVLDPANLSGSAIAWPDAPAGAGKPARRIGATVVLNAQGALLYAAAKA
KHLTAFDQSVGHEAAVNDSDEQMRKAATELAYALKRNGTGSVTFSDINGEPLNARHPFAR
ILHQSGFTPVPQGMRLY
NT seq 4734 nt   +upstreamnt  +downstreamnt
atgtacgaaagcctgagcctgttttccgaacccaccaagatgtggttcgagcatgccttc
ggtcagccgaccgaggcacaggctcaggcatggccggcaatccattccggtcgcaatgtc
ttggtcatcgcccctaccggttccggtaaaacattggccgcgtttctctcagccatcgac
cgattgatgaccgtgccacgcacgcggcgtgccggtgtgcgtgtgctgtatatctcgccg
ttaaaggcgctcgcggccgatgtggccaagaacctagaacagcctttggagggcattgct
gcacaatgcgaggcgcaagggctgcccgtgccgaagatcgcggtcgccactcgttcaggc
gacaccaccgcacaggagcggcgacgcatagcctcccatccaccggatatcctcgttacc
acgccagaatcgttgtatttgttgctcacttcgaaggcagggcggattctcggcactgtc
gatacggtgatcgtcgatgagattcatgcagtggcgggcaccaagcgcggcgcacatttg
gcggtaagtctggaacggctggagaaccttgtcacagaatcgcgcaagcgagatgcaatc
gatgcagatgctgatgagggcggtgatgccgccgtcgatgctggccgtggcgatcgtcat
atgcagtgcattggtctatccgctacggtgaatccgcctgaaaaggcggcgcgattcctg
ggcggcgggcaaccggttaccatcgtgaatcccggtgggcggcctgcaatggatttgcgc
atgattgagccgttggaaaacatgcgtgatttgcagtccgtgaatgccaagcagcgtgtc
ggtggcgtggatgctgaacggtccgctccgcatatcagtggtgtcacgccggccatgcag
cgacttgctgaacgcaggggcattgtgccggtggatgatagagatgtttcttccacttct
ggggacgattctgatgcgagtgatgcgttcgattcctccgcgttggttggagcggcgggc
gaccgtacctccggttccatttggcccgtggtggaacgcagtattttggatgagattctc
gcgcaccgcactacattggtgttcgttaattcgcgtggtgtggctgagaaactcactgcg
cgcttgaacgatctgtatgcgcagacccggcatggcaccaatcccgacactgtgcgggat
ctgggctctccggaaggccgcgaagggttctccacgcattacgatgctgtggtcggctcc
accaccatgcttgtcggctcacatgagggcgatgatgtcatcgccatggctcatcatggg
tcggtttccaaagaccgtcgcaaaatgattgaggaacggcttaaacgtggtgaattgcgt
tgcgtggtggccacctccagtttggagctcggcattgatatgggctcggtcgacttggtg
attcaagtcgatacgccgttgtcggtctcctccggattgcagcgtgtaggccgtgccgat
catcaggtcggtggcgtctctcacgcattgttctacccgctcacccgtcagcagattgtc
actggggccgcaagtctggaagccatgattgccggcgatatagaaccattggccgtgccg
cgcaatccgctcgatattcttgcccagcagaccgtggccgctgccgcgatgcacgatttg
aacgctgatgactggtatgccacagtgcgtcgtgctgcgccgtttgccgaactgccacgt
gacatgttcgatgcggtaatcggcatgatgtccggcgaatacaacagcgaggaattctcg
gccttccggccgcgactggtatggaatcgggataatggcctgatttccgcccgtcccggt
tcgcagaaagtggccgttacctctggcggtacgattcccgatcgagggctgtacaccgcg
gtcctgcctgaggcggacgccggcaaaggccagcgtcgcgtcggcgagttggatgaggag
atggtctacgaatcgcgcgtgggcgatgtcattacgctcggcacctccacatggcagatt
caggaaatcacccgtgatcgtgtggtcgtgactccggctccgggccgcaccgcccgcctg
ccgttctggcacggtgaaggcgctggccgtgactacggtttcagccgtaccatagcccgc
ttcacccgagaaatcgccgccggattagacgtgaagcggactgaggggaggtctgccgca
gaaggtccagctgtcccaaccttcatcccaacaatcctcacccgtctccaccacgatggc
ctagatgccaacgccatcaccaacttggcccgcctactctccgagcaacaagccgccact
ggtgcagtccccagcgaccaaacccttatcgtggagcgcacacgcgatgaagacggcgga
tggcgcatcgtgctgttaagccccttcggccgccgcgttcacgaaccgtggtccatggcc
atcagccgcagactgcgccaacgctacggtttcgacgggcaggtatatgccgccgatgac
ggtatcgtcattcagctaccggacggtgacggacatattcctgctcaagacctgttcctt
ttcgacccagaagacctcaaagcagatgtagagcgtcaagtgggcgagtccgtgctattt
gccgcacgattccgcgaatgcgccgcccgatcactgttcatgccgcgatccgacccgggc
cgtcgcgtgcccctatggcagcagcgattgcgagccgcacagctcctgcaatcggctcgc
gtggtcaagaactttccgcttctgttggagactgcacgtgaatgtttgcaggacgtgtat
gacatgcccgccctgaacgaggtgatgaccggattgcaagccggcaccattaccgtgaag
gacgtggaaaccgagtcgccatcgcctttcgccgagaacattctctttggcttcgtcggc
gtggtgatgtaccagtatgaccaacctcaggccgagcgtagcgcgcaactgctgtctctc
gatccgcacgtgctcgaacgcttgctcggcaccaccgatatggcacaagtgctcaacccg
gacgtgattcgcgaagtcgaacaggaactgggggagcacactttctggaatgagcttgcc
gacgatgatgtgactggtcgcgtgacccgttacgccaaaacccatggtcctttcaccgcc
gatcagctcatagccgatctacacctcgatgctacggatgccgtgcacactctggatgtg
ttggctgccaaaggcgagttgctgcaaggccactttgtagatgatgacgagcaaggccaa
cagtggctccataaggacgtattccgccgtattcggtctcgctcattggccaaggcgcgt
aaagcagtcaagccagtagaatcagaggcgttccagatgtttcttatcgaccgacaaggt
atcgggccggtcggcggcgaacgatatgaaggtgctgacgggctcatgcgcgttatcgag
cagctggagggcatatcactgcccactgcactctgggagtcggcagtattccccgcacga
gtacgagactaccaacctgcattgctggatgagttgctgaccagcggcgatgtggtctgg
gtcggctcaaaaaccgggggaaccagtgcgatggaccccggtgaggttgctttctatccg
gcggattcaatattgttcagcggtgtggaacatggtacgacatcgaacgcctcagacgcc
accatgccggaagcgattctgaccgcactggactcagggggagcgttccatgcccgtcaa
ctgatggatgccgccaaacgtgcgtggaatgagaccgcggagccggacatcaatccaaac
accggcgaaatcattccgcaagagtggagcgaacagcagttcaaggatgccttgtggagc
ttggtctggcaaggtaaggtcaccaattccagcttcgcgccggtgcgtgcattaaccgca
ggcgcagcaagcccgcgtaaatccactacatcacgtcgtcgtgggcgtgtcgctccgatt
cgccgagccactacggatatgacgttaggaggtttgtggtccgccgtaatcgggcaagct
gaagccgaagacaccgaccagaccgaacgggcactcgcactggtcgagacgttgctggac
aggtatggcgtcatcgcgcagccggtgattgacaaggaaaatatcccgggtggctactca
gcgttgtatccggtattgaatcgcatggaggagcatggtcgactggtacgaggcatgttc
gtccgtggtttcggcgcggcccaatttgccgagcgcgacaccgtggatgcgttgcgtcat
ccgtcagagcatcgtggccagtccgtggtggcattgagtgtgctcgaccccgcaaatctc
agtggctccgccatcgcgtggccggacgcgcctgccggtgcgggtaaaccggcacgccgt
atcggagccacggtcgtgctcaatgcgcaaggcgcgctactatacgcggccgccaaagcc
aagcacctgacagcgttcgatcaatcggtcggccatgaagccgctgtcaatgattccgac
gaacaaatgcgcaaggccgccacagaactggcctacgccctcaaacgcaatggcaccggc
tccgtgacattcagcgacatcaatggcgaacccctcaacgcccgtcaccccttcgcccgc
atcctccaccagtccggcttcacccccgttccccaaggcatgcggctgtactga

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