Bifidobacterium longum subsp. longum F8: BIL_13860
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Entry
BIL_13860 CDS
T02580
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
blg
Bifidobacterium longum subsp. longum F8
Pathway
blg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIL_13860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blg03019
]
BIL_13860
03400 DNA repair and recombination proteins [BR:
blg03400
]
BIL_13860
Enzymes [BR:
blg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BIL_13860
Messenger RNA biogenesis [BR:
blg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BIL_13860
DNA repair and recombination proteins [BR:
blg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BIL_13860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
CBK70862
LinkDB
All DBs
Position
complement(1618121..1620076)
Genome browser
AA seq
651 aa
AA seq
DB search
MTAHQAALEALTRYFGYDSFRPGQQGIVEALLAGRDVLGVMPTGAGKSVCYQIPAALSPG
MTLVISPLISLMRDQVDALNDLGLPAAFINTTQTPDEQAMVFAQAAAGQIKLLYVAPERL
ETGRFRDFAARTTISLIAVDEAHCVSQWGQDFRSSYLGIGDFIAGLPQRPPVGAFTATAT
ERVRRDIVGLLGLRNPAVTVTGFDRPNLYFDVVKLETKYKAAWVARYVADHPDESGIVYC
ATRKTTEALTDTLNQMGHPAVAYHGGMSPDAREAAQRDFITDKVPVVVATNAFGMGIDKS
NVRYVIHHNLPESIEAYYQEAGRAGRDGEPSRCTLLWNESDIVTRRRLLDNDYENERLTP
EEQEIVRQSKRRLLDGMVGYCRTTDCLHRYMTRYFGQELSPNAGSTAGEDIAADSSQSGK
CGACSNCESTFETIDVTRVAQAISRCVHDVGQRVGSGKIVKILRGSRAQDLAWLNPERMP
TFGMLKDVNEARVRDVLSQMATDGYLSIAEGRMPIVMFGARAAETAAPDFHYEIKRVERK
SEAAGSGRSGGVADTADSANVPGDALGSYIPDDDEESLFQKLRELRRTIAQEIGKPPYIV
FSDKTLRDMARIKPVTNAQFLAVNGVGQHKLDLYGQRFMQAIASFNAGSAS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacagcacatcaggcggcgctggaggcgctcacacgatacttcggctatgactcgttt
aggcccggacagcaaggaattgtcgaggctttgcttgccggacgcgatgtcttgggcgtg
atgcccaccggcgcaggcaagtccgtgtgctaccagattcccgccgcgctcagcccgggt
atgactttggtcatatctcccttgatttccctgatgcgcgaccaggtcgatgcgctgaac
gacctcggtctgccggccgcgttcatcaataccactcaaactcccgacgagcaggcgatg
gtgttcgcccaagccgccgccgggcagatcaaactgctgtacgtggccccggaacgcttg
gaaaccgggcgattccgcgactttgccgcccgtacgacgatctcgctgatcgccgtggac
gaagcccactgcgtctcccagtggggtcaggacttccgctcgtcgtacttaggtatcggc
gatttcatcgccgggctgccgcagcgtccaccggtgggtgcgttcaccgccaccgccacc
gaacgggtgcgccgggacatcgtgggactgctgggattgcggaatccggccgtcaccgtt
accggattcgaccggccgaacctgtattttgatgtggtcaaactggaaaccaaatacaag
gccgcatgggtggcgcggtatgtggccgaccatccggacgaatccggcatcgtctactgc
gccacccgcaagaccaccgaagcgctcaccgacacgctgaaccagatggggcatccggcc
gttgcctaccatggcggcatgtcgccggacgcgcgtgaggcggcccagcgcgacttcatc
accgacaaggtgccggtggtcgtggccaccaacgctttcggcatgggcatcgataagtcc
aacgtgcgttacgtcatccaccacaatctgcccgaatccattgaggcctactatcaggag
gccggccgcgcgggccgtgacggcgagcccagccgatgcacgctgctgtggaatgagtca
gacatcgtcacccggcgtcggttgctggataacgattatgagaacgaacgattgactccc
gaagagcaggaaatcgttcgccagtccaagcgccggctgctggacggtatggtcggctac
tgccgcaccaccgactgcctgcaccggtatatgacccggtatttcggtcaggaattgtcg
ccgaatgctggttccacggcgggtgaagacattgcggcggactcttcgcagtccggcaaa
tgcggtgcctgctcgaactgcgaaagcacgttcgagaccatcgacgtgacccgcgtggcg
caggcgatcagccgttgcgtgcatgacgtggggcagcgcgtcggttccggcaagatcgtc
aagatcctgcgcggttcgcgggcacaggatctggcatggctgaacccggagcggatgccc
accttcggcatgctcaaggacgtgaacgaggctcgcgtgcgcgacgtgttgagccagatg
gccacggacgggtacctgtcaatcgccgaagggcgtatgccaatcgtcatgttcggtgcg
cgggcggccgaaaccgccgctcccgacttccactatgagatcaaacgggtggaacgcaag
tcggaggcggccggttccggtcggagcgggggagtggctgatactgccgattccgccaat
gttcccggcgatgcgctgggctcgtatatcccggacgatgacgaggaatcgctgttccag
aagctacgcgaactgcgacgcaccatcgcccaggaaatcggcaagccgccgtacatcgtg
ttctccgacaagaccttgcgcgacatggcccgcatcaagccggttaccaacgcgcaattt
ctggcggtcaacggcgtcggtcaacacaagctcgacctctacggccagcgcttcatgcaa
gccatcgcctcgttcaatgccgggagtgcgtcataa
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