Bacillus paralicheniformis: BaLi_c05680
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Entry
BaLi_c05680 CDS
T02694
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
blh
Bacillus paralicheniformis
Pathway
blh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BaLi_c05680 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blh03019
]
BaLi_c05680 (cshA)
03009 Ribosome biogenesis [BR:
blh03009
]
BaLi_c05680 (cshA)
Enzymes [BR:
blh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BaLi_c05680 (cshA)
Messenger RNA biogenesis [BR:
blh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BaLi_c05680 (cshA)
Ribosome biogenesis [BR:
blh03009
]
Prokaryotic type
rRNA helicases
BaLi_c05680 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGN34978
LinkDB
All DBs
Position
572313..573776
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AA seq
487 aa
AA seq
DB search
MTITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIP
LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKK
NPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTL
LFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQS
PELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTT
KRKMDRMKAPTLDEAIEGQQQVTVDRLRTIIEENNLNFYMTAAAELLEDHDSVTVVAAAI
KMMTKEPDNTPVRLTEEAPLRTKRNKNHHHRSSKRRDGGGYRGKNNRSSYDKKRSSNDRR
QKKSYNS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
ttgacaataacgtttcaagattttcaattaagttctgatctcacaaaagcgatcaagcgt
atgggatttgaagaggcaacaccgattcaggcacaaacgattccgctcggccttgcaaat
aaagatgtgatcggacaagcgcaaacgggaacaggaaaaacggctgcatttggcatcccc
cttgttgagaaaatcaaccccgagtctcctaacattcaagccattgttatcgcacctact
cgtgaattagccattcaagtttctgaagagctatataaaattggacaggataaacgcgct
cgcgtgctgccgatttacggtggacaggatatcggacgccagattcgcgcgcttaagaaa
aatcctcatattatcgtcggaacacctggccgtttgcttgaccatatcaaccgccgcaca
atgcgtcttcaaacagtgaacaccgttgtgcttgatgaagcggatgaaatgctgaacatg
ggattcatcgaagatatcgaatccatcctttccaatgtgcctgctgagcatcaaacattg
ctgttttctgcaacaatgcctgctccgattaaacggattgcagaacgtttcatgaccaac
ccggagcacgtaaaagtgaaagcgaaggaaatgacagtatcaaacattcagcagttctac
ctcgaagtacatgaacgcaaaaagtttgatacgctgacacgtcttcttgacatccagtct
ccggaactggcgattgtattcggccggacaaagcgccgcgtcgatgaactgacagaagcg
cttaatctgcgcggttatacagctgaaggaatccacggcgatttgactcaggcgaagcgg
atggtggcactccggaaatttaagcaaggcgcaattgaagtgctcgttgcgacagacgtt
gcggcgcgaggccttgatatttcaggggtaacgcacgtctacaacttcgatgtgccgcag
gatcctgaaagctatgttcaccgcatcggaagaacgggacgcgcaggtaaaacaggaatg
gcgatgaccttcattacaccgcgcgaaaaagacatgctgcgcgccatcgagcagacaaca
aaaagaaaaatggaccgcatgaaagcaccgactctagatgaggcgattgaaggacagcag
caggtgacggttgaccgcctccggacgatcatcgaggaaaataacctgaacttctatatg
acggctgcagcggaattattggaagaccatgattctgtgacagttgttgcggctgccatt
aaaatgatgaccaaagagccggacaacacgcctgtccgtttgacggaagaggctccgctc
agaacgaagcgaaacaaaaatcaccaccaccgttcctcaaaacgcagagacggcggcggc
tacagaggaaagaacaatcgttcatcctatgataaaaagcgttcttcgaatgacagacgc
caaaaaaaatcatataattcataa
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