Bacillus paralicheniformis: BaLi_c14130
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Entry
BaLi_c14130 CDS
T02694
Symbol
yjcD
Name
(GenBank) putative ATP-dependent DNA helicase YjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
blh
Bacillus paralicheniformis
Pathway
blh03420
Nucleotide excision repair
blh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BaLi_c14130 (yjcD)
03430 Mismatch repair
BaLi_c14130 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blh03400
]
BaLi_c14130 (yjcD)
Enzymes [BR:
blh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BaLi_c14130 (yjcD)
DNA repair and recombination proteins [BR:
blh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BaLi_c14130 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
BaLi_c14130 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
CPSase_L_D3
AAA_12
Salp15
Branch_AA_trans
Motif
Other DBs
NCBI-ProteinID:
AGN35782
LinkDB
All DBs
Position
complement(1389652..1391931)
Genome browser
AA seq
759 aa
AA seq
DB search
MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKHCGLPLRLKLSIHEEPHFFHRENG
DFSQCEAACLNEKTEQTRQNDYTESGVFRLPKGKAIGEEKKTDADFWTPPREASIHSPFS
PAEETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGSGKTRVLTARAAYMISRLDIPP
SAILLVTFTTKAVKEMKERMASQYGLPMQTVNRLVTGTFHSFFYKILYHHDPARWNGEHL
LKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHRL
YRQYEEQKAARRQFDFDDMASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAII
KLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYPKAKTVRLTTNYRSSHPIVASA
DMVVRKNKKRFPKTLSAARDDRQKPLIFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAIL
YRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQILAYLYLSQNQDDAEAVKQILP
ALFLKQSALNTLKALSITEDCTMVHALEKLTDIKPFQLDKIKKIVPFFTGLKTMKPVEAI
SFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKKFKTIPEFLEHVDHMRAAEKQK
ADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVAM
TRAEDRLYISVPSVRRGRTAYRSRFLQPVLRPNPQVQLQ
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatgcgcccgattcaataaccgagacattcatatacatacatattcgagagaacac
ctgcaattcctctttgatgaagcaagaaaagacagaatcacgtgtaaacattgcggcttg
cctctcagactgaaattgtcgattcatgaagaaccacattttttccaccgggaaaacggg
gatttttctcaatgtgaagcagcttgcttaaacgagaagacagagcaaaccagacagaac
gactatacagaaagcggcgtgttccgtctcccgaaaggcaaagcgatcggagaggaaaag
aagacggatgcggacttctggacgccgcctcgcgaagcttccatccattctcctttctcc
ccagcggaagaaacggccccggaaccggtctttccgaatgtgccgctgaatgagaaacag
cttgccgccgtgacggcccccgaagaaccccttctcgttctggccggcgcgggaagcgga
aaaacacgggtattaaccgcgcgagcggcttatatgatatcccggctcgatatcccgcct
tccgccattttgctcgtcacattcacgacaaaagccgtgaaagaaatgaaagagcggatg
gcctcgcaatacggattgccgatgcagactgtgaaccgcctcgtgacaggcaccttccac
agctttttctacaaaattctttatcaccatgatccggcaagatggaatggcgagcacctg
ctgaaatgggaatggcaaaaagaacaatacatcaaaatggcccttgccgaagaagggctt
gatgaaaaagattttccggttgatcaggcgatccagcagatcggctactggaagaacgct
tatcttccgggcgaacagattccgctggaagacgaatgggaaaagcgggttcaccggctg
taccgtcaatatgaagaacaaaaagctgcgcggcgccaatttgatttcgacgatatggca
tctgcatgctggcagctgtttcaagaacagccagacattttaaaacgatatcagacgcgc
tttcacgcgattttgatcgacgaatttcaggacattaaccctgttcagtatgccatcatc
aagctgttggcgagcccggaaaacaacctgacctgtgtcggggatgatgaccagtcaatc
tacgcgttcagaggcagcagcccttcttttatactcgattttgaaaaagattatccgaag
gcgaaaacggtccgcctcacgacgaattacagatcgagccatccgattgtggcaagcgct
gatatggtcgtgaggaaaaataaaaagcgttttccgaaaacattaagtgccgcgagagat
gaccgccaaaaaccgcttatattttatccttatgatgaagaggaagaagcgattatgatc
gtctctgatatccaagaaaaaattgaaatgggcgctaagcctgatgacttcgccatccta
taccggacaaacagcagcgggcgcgcaatctttgaacgtctgcaccagtcagctattccg
tacacggctgaacaaggcgtccggtcgttttacagcaggagaatcgtccggcagatcctg
gcttatctctacttaagccaaaatcaggatgacgcggaagccgtcaaacagattttaccc
gccctctttctcaagcagtccgcattaaatacgcttaaagcgctctcgattaccgaagat
tgcacgatggttcacgcgcttgaaaaactaaccgacatcaaaccgtttcagcttgataaa
ataaagaaaatcgttccttttttcacaggcttaaaaacgatgaaaccagttgaagcgatc
tctttcgcagaggaaaaaatgggattttccgattacttaaaaaagcgcggtaacgaagga
aacaagctcgaaaaagggtctgacgatctgcgggatctcaaaacagcggcaaaaaaattc
aaaacgatccccgaatttcttgagcatgtcgatcatatgagagcagcggaaaagcaaaaa
gctgacggatacggtgttcagcttttaacaatccaccgtgcgaaagggcttgaattcaaa
acggtctatatcctgggggtgcaggacggctcgattccgcatgactttgcccttgagaca
gcgagaaaaggcgacgaaaccgctcttgaagaagagcggaggctgctgtatgtcgccatg
acccgggccgaggatcgtctgtatatcagcgtcccttccgtcagaaggggcagaacggca
taccgctcaaggtttttgcagcctgttttacgcccgaatccccaggtccagctgcaataa
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integrated database retrieval system
