Bacillus paralicheniformis: BaLi_c19370
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Entry
BaLi_c19370 CDS
T02694
Symbol
rnjB
Name
(GenBank) ribonuclease J2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
blh
Bacillus paralicheniformis
Pathway
blh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BaLi_c19370 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blh03019
]
BaLi_c19370 (rnjB)
Messenger RNA biogenesis [BR:
blh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BaLi_c19370 (rnjB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AGN36305
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Position
1897273..1898937
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AA seq
554 aa
AA seq
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MKKNTENIRIIALGGVGEIGKNLYVIEIDSDIFVVDAGLMHPENEMLGIDVVIPDISYLI
ERSDRVKAIFLTHGHEENIGGVFYCLNKLSVPVYGTKLTLALLKETLKQYGVNKKPDLRE
IHSKSVITFESTKVSFFKTNHSIPDSVGVSFKTSLGSIVCTGDFKFDQTPVLNQTSDIGE
IAKIGNSGVLCLLSDSANAEKPGYTPSEAVVGGEISDVMYNAENRVIIAVFASNFNRIQQ
VIDAALQNGRKLAVSGKNISTILQLAMKLGYVTADEDLFIPVQEVKKYPKREVAILTGDN
HGEPLAALTRIAKQGHKQLDIEKGDTVLIASSPIPGQELVYSKAVDLLTRAGAQVVFAQK
RVHVSGHGCQEELKLMLNLLKPKYLIPVNGEYRMQKAHSKLAEEIGMKRSDIFLIEKGDV
VEFRGQNVKIGDKVHSGNILIDGLGVGDIGNIVLRDRRLLSQDGILIVVITLDKKKKHLV
SGPEIITRGFVYVRESEQLIVEATELVRELVNESTENAVVEWSALKQAMRDALNQFLYEK
TKRKPMIIPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaaaatacagaaaatattagaattatcgccttaggaggcgtcggagagatcgga
aaaaacctttatgtcattgaaattgattctgacatattcgtggttgacgccggtctcatg
catccagaaaatgaaatgctgggtatcgatgtggtcattcctgacatttcatatttaatt
gaacgatctgaccgcgtaaaggcgatttttctcacacacgggcatgaggaaaacataggc
ggcgtattttactgcctgaacaaactttctgtgcctgtttacggaacgaagctgacgctc
gcccttttaaaggaaacgctgaagcagtacggtgtaaacaaaaagcccgatttaagagaa
attcattcaaaatctgttattacatttgaatcgacaaaggtgtcattctttaaaacaaat
cacagcattccggattccgtcggtgtcagctttaaaacatccctcgggtccatcgtgtgc
actggcgattttaaatttgaccagacacctgttttaaaccagacaagcgacatcggcgaa
attgccaaaatcggcaacagcggtgtgctgtgcctgctttccgacagtgccaatgctgag
aaaccgggctatacgccttcagaagcagtcgtcggcggagagatatccgatgtaatgtac
aatgccgaaaaccgcgtcattattgccgtgttcgcgtctaactttaaccggattcagcag
gtcattgatgccgcgctccaaaacggcaggaagcttgcggtttcaggaaaaaatatttcg
acgatactccagctggcgatgaagctcgggtatgtcacggcagatgaagatctgttcatc
cctgtccaggaagttaaaaagtatccgaaaagagaagtcgcgattttgacaggggacaac
catggagagccgctcgccgcattgaccaggatcgcaaaacaagggcataagcagctcgac
attgagaaaggggataccgtcctgatcgcatcctcccctattccgggtcaggagcttgtc
tactccaaagcggtcgacctcttaacaagagcgggcgcgcaggtcgttttcgcccaaaaa
cgcgtccatgtatcaggccatggctgtcaggaagaactgaagctgatgctcaacctgctg
aagccgaagtatttaatccccgtaaacggtgaatacagaatgcaaaaagcgcattccaag
cttgccgaagaaatcggtatgaaacggagcgacattttcctgattgaaaaaggagacgtc
gtggaattccgcggacaaaacgtgaaaatcggcgataaagtgcattcaggcaatattttg
atcgatggactcggtgtcggcgacatcggcaatatcgtgctcagagaccgccgtcttctg
tcccaggacggaatcttaatcgttgtgattacccttgataaaaagaaaaaacatcttgta
tcaggacccgaaattatcacgagaggttttgtctatgtcagagaatctgaacagctgatc
gttgaagcgacggaacttgtcagggaactcgtcaacgaaagcacagaaaacgccgtcgtc
gaatggtccgccttaaaacaggcgatgcgtgacgcattaaaccagttcctatacgaaaaa
acgaaacgaaaaccaatgatcattccaatcatcatggaagtataa
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