Bacillus paralicheniformis: BaLi_c22930
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Entry
BaLi_c22930 CDS
T02694
Symbol
yocI
Name
(GenBank) putative ATP-dependent nucleic acid helicase YocI
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
blh
Bacillus paralicheniformis
Pathway
blh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BaLi_c22930 (yocI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blh03019
]
BaLi_c22930 (yocI)
03400 DNA repair and recombination proteins [BR:
blh03400
]
BaLi_c22930 (yocI)
Enzymes [BR:
blh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BaLi_c22930 (yocI)
Messenger RNA biogenesis [BR:
blh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BaLi_c22930 (yocI)
DNA repair and recombination proteins [BR:
blh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BaLi_c22930 (yocI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGN36643
LinkDB
All DBs
Position
complement(2273901..2275682)
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AA seq
593 aa
AA seq
DB search
MLEKAEALLQHYYGYPSLRPGQKKAIQSVVSEKRDTACIMPTGGGKSICYQIPALLMEGT
TIVISPLISLMKDQVDALNQLGIQAAYVNSSLGHGEIAERLSVLKEGGYKLFYVTPERLT
SPDFIRVLSRIHIPLTAIDEAHCISQWGHDFRPSYRHIESFLNSLGTRPVVLALTATATP
EVHEDICTQLGIEKESTVFTGFSRDNLTFKILKGENKDRFIESYVEKNRSEAGIIYTATR
KEAERISSRLSQKGIAAGCYHGGMNDEERDRQQDLFLNDEISVMTATSAFGMGIDKSNIR
YVIHAQIPKNMESYYQEAGRAGRDGLDSECILLFSPQDIRLQRFLIEQSTEDEDIRAQDV
KKLRQMVDFCHTEGCLERFILSYFGEVSTEDCGRCSSCLDTRSITDVTKEAQMVLSCIIR
MGERFGKTMVAQVLAGSKNKKVTENGFQQLSTYGILKNRSIADISDFIEFLIADEYIQMS
DGTYPVLFVANKGRNVLLGREAVMRKEKMQTSQIVKDDELFERLRALRRKLAQEQGVPPF
VIFSDETLREMSGKVPLTDEELLSVKGVGEQKRVKYGAVFLQELQAYKTEKEA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgctagagaaagctgaagctttattgcagcactattatggctatccttcactgcgtccg
ggtcagaagaaagccattcaatcggttgtttctgaaaaacgggatacagcatgcattatg
cctacgggcggagggaaatcaatctgctaccaaattcccgcgctccttatggaggggaca
accattgtgatctctcctttaatttccttgatgaaggaccaggtggatgcgttaaatcag
cttggaattcaagctgcgtacgtgaacagttctttaggccatggcgaaatcgctgagcgg
ctttccgttttaaaggaaggcggctacaagctgttttatgtcacacctgagcggctgacg
tctcccgattttattcgcgtgctttcccgcattcatatcccgctgacagcgattgatgaa
gctcactgcatttcacagtggggccacgatttcaggccgagctacagacatattgaaagc
tttttaaatagcctcggcacccgtccggtcgtattggcattgacggctaccgcaacgccc
gaggttcatgaggatatttgcacacagctcgggatcgaaaaagagagcacggttttcacc
ggtttttcacgggataatttgacgtttaaaattttaaaaggcgaaaacaaggatcgtttt
atcgaatcatatgtggagaaaaaccgctcagaggcgggaattatttatacagcgacaaga
aaggaagccgaaagaatatcaagccgcctgtctcaaaaaggaattgcggccgggtgctat
cacggcgggatgaatgatgaagaaagggaccggcagcaggatctctttttaaatgacgag
atcagtgtgatgacagcgacctcagcattcggaatgggcatcgataaatccaatatccgc
tatgtgattcatgctcaaattccaaagaacatggagagctattatcaagaagcaggacga
gccggacgcgacggtcttgacagcgagtgtatcctgctattttctcctcaggacatccgg
cttcagcggtttttaatcgaacagtcgacagaagatgaagacattcgggcgcaagacgtg
aaaaagctgaggcaaatggttgatttttgccatactgaaggctgtcttgagcggtttatt
ctttcttattttggcgaagtttcgactgaagactgcggcaggtgcagcagctgtctcgac
acccgaagcatcaccgatgtgacgaaggaagcacagatggtactgtcctgcatcatccgc
atgggagaaaggttcggaaaaaccatggtggcgcaagttctggcaggttcgaaaaataag
aaagtgaccgaaaacggcttccagcaattatcgacttacggaattttaaagaaccggtct
attgccgacatcagcgattttatagagtttttaatcgcagatgagtacatccagatgtcc
gacggaacatatcccgttctctttgtcgccaacaaggggcgaaacgttttgctcggccgg
gaagcggtgatgcgcaaagaaaaaatgcagacaagtcaaattgttaaagatgacgaattg
tttgaacggttaagagcgctgcgcagaaagcttgcccaggaacaaggcgtgcctcctttt
gtcatattctctgacgaaacgctgcgggaaatgagcgggaaagttcccctgacagacgaa
gaacttttgtcagtcaaaggagtgggagaacaaaaaagagtaaaatacggcgctgtattt
ctacaggagcttcaagcctataaaactgagaaagaagcataa
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integrated database retrieval system
